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The map label for this gene is yscR [H]

Identifier: 29141748

GI number: 29141748

Start: 1353150

End: 1353797

Strand: Direct

Name: yscR [H]

Synonym: t1287

Alternate gene names: 29141748

Gene position: 1353150-1353797 (Clockwise)

Preceding gene: 29141747

Following gene: 29141749

Centisome position: 28.24

GC content: 42.44

Gene sequence:

>648_bases
ATGTCTTTACCCGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTGCTTTCAATACTGCCTCTCATTATCGTCATGGG
AACCTCTTTCCTTAAACTGGCGGTGGTATTTTCGATTTTACGAAATGCTCTGGGTATTCAACAAGTTCCTCCAAATATCG
CACTGTATGGCTTCGCGCTTGTACTTTCCTTATTCATTATGGGGCCGACGCTATTAGCTGTAAAAGAGCGCTGGCATCCG
GTTCAGGTCGCTGGCGCTCCTTTCTGGACGTCTGAGTGGGACAGTAAAGCATTAGCGCCTTATCGACAGTTTTTGCAAAA
AAACTCTGAAGAGAAGGAAGCCAATTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGACATAAAAAGAAAGATAA
AACCTGATTCTTTGCTCATATTAATTCCGGCATTTACGGTGAGTCAGTTAACGCAGGCATTTCGGATTGGATTACTTATT
TATCTTCCCTTTCTGGCTATTGACCTGCTTATTTCAAATATACTGCTGGCTATGGGGATGATGATGGTATCGCCAATGAC
CATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCGCAATTGGTACAGAGCT
TTTCATGA

Upstream 100 bases:

>100_bases
ACACGTTGGTATCTTTGCAAAAATACAGCGTAAACCTGATAAGAAAAATAATATGCGAACAATATAATAGCGTTCCAGGT
CGTGTCATGAGAGATACAGT

Downstream 100 bases:

>100_bases
ATGATTCTGAATTGACGCAATTTATAACGCAACTTTTATGGATCGTCCTTTTTACGTCTATGCCGGTGGTGTTGGTGGCA
TCGGTAGTTGGTGTCATCGT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

Sequences:

>Translated_215_residues
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
>Mature_214_residues
SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPV
QVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIY
LPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

Specific function: Plays A Role In The Flagellum-Specific Transport System. [C]

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=212, Percent_Identity=38.6792452830189, Blast_Score=140, Evalue=6e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 24128; Mature: 23997

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS01060 FLIP_1 ; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
HHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
HHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]