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The map label for this gene is ydiK [H]

Identifier: 29141696

GI number: 29141696

Start: 1299803

End: 1300921

Strand: Reverse

Name: ydiK [H]

Synonym: t1232

Alternate gene names: 29141696

Gene position: 1300921-1299803 (Counterclockwise)

Preceding gene: 29141700

Following gene: 29141695

Centisome position: 27.15

GC content: 56.12

Gene sequence:

>1119_bases
ATGGTAAATGTTCGTCAGCCCAGGGATATTGCGCAAGTGCTGCTATCGGTGCTGTTTTTAGCCATCATGATTGTGGCCTG
TTTGTGGATAGTACAGCCTTTTATTTTGGGGTTTGCATGGGCAGGTACGATTGTTATCGCGACCTGGCCCGTTTTGCTGA
AATTACAAAAAATATTGTGGGGCCGCCGCTCGCTTGCCGTACTGGTCATGACGCTGCTGTTAGTGCTGCTCTTCGTTATT
CCCGTCGCCTTGCTGGTGAACAGCATTGTCGATGGTAGCGGCCCGCTCATCCATGCAGTGACCGGCGGCGATATGACGCT
ACCCGATCTGGCATGGTTAAATAATATTCCGTTAGTTGGCGCCAAACTGTATGCCGGATGGCATAGCCTGCTGGATATGG
GCGGTAGCGCTATTATGGCGAAAGTGCGGCCTTATATCGGCACAACCACGATCTGGTTTGTCGGTCAGGCGGCGCATATC
GGACGCTTTATGATGCACTGCGCCCTGATGCTGTTGTTTAGCGCCCTGCTTTACTGGCGCGGCGAACAAGTGGCGATGGG
TATACGCCATTTTGCCTGTCGTCTCGCGGCTAAACGCGGCGATGCGGCGGTTCTGCTGGCTGCCCAGGCGATCCGCGCCG
TGGCGCTTGGCGTGGTGGTCACCGCGCTGGTACAGGCGGTACTTGGCGGCGTCGGGCTGGCGATTTCCGGCGTGCCTTAC
GCTACCCTGTTGACGGTAGTGATGATCCTTTCGTGCCTGGTTCAGTTGGGGCCGTTGCCGGTATTGATTCCAGCCATTAT
CTGGCTTTACTGGACAGGCGACACCACCTGGGGCACCGTGCTGCTGGTTTGGAGCGCCGTCGTCGGCACTCTGGATAACG
TGATTCGCCCGGTACTCATCCGCATGGGCGCCGATTTACCGCTGCTTCTGATCCTTTCCGGGGTAATCGGCGGCCTGATT
GCATTCGGTATGATTGGTCTGTTTATTGGACCGGTGCTTCTGGCCGTGACCTGGCGTTTGTTCTCCGCATGGGTACATGA
AGTTCCGGCGCCGACGAATGAACCAGAGGAGATCCTTGAAGAGCTGGATGACATCGAGGAAGCCAACAAGCAGTCATAA

Upstream 100 bases:

>100_bases
CCTGTTAAAAACCGCTGAAATTGCTCATCATTATAGGGTGTGGTTTGCATGTTCACGTCGCGCCAACGTTCTGGCGCAAA
GACAAAGGTGAAAAGTATTT

Downstream 100 bases:

>100_bases
TCCCGTCGGGCGGCATTGCCGCCCGATGCTTTAGCGACGTTTATCAATTCAACGCACACCCCATTTTGATTCGCCCGTCT
GTTCCCCGCCGCATCTCATT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVI
PVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHI
GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY
ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS

Sequences:

>Translated_372_residues
MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVI
PVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHI
GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY
ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS
>Mature_372_residues
MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVI
PVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHI
GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY
ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLI
AFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=370, Percent_Identity=88.9189189189189, Blast_Score=633, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40074; Mature: 40074

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCHH
AKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSALLYWR
HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCH
ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTLDNVIRPVLI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEILE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELDDIEEANKQS
HHHHHHHCCCCC
>Mature Secondary Structure
MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCHH
AKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSALLYWR
HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCH
ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTLDNVIRPVLI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEILE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELDDIEEANKQS
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]