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The map label for this gene is ydjN [H]

Identifier: 29141700

GI number: 29141700

Start: 1305224

End: 1306570

Strand: Reverse

Name: ydjN [H]

Synonym: t1236

Alternate gene names: 29141700

Gene position: 1306570-1305224 (Counterclockwise)

Preceding gene: 29141707

Following gene: 29141696

Centisome position: 27.27

GC content: 48.11

Gene sequence:

>1347_bases
ATGGTTGTTACGCTCGCGTATATCGCACTTTTTTTGGTTTTCTCGTGGGCCATCTTGAGAATTAATCAAAAAAGCGATTC
CCTGTCGAAAAGCGTTTTTATCGCTATCTTTTTAGGGGCTGTTATTGGTTTATCCCTGCATTTTATTTCAGCAAATCACA
CTAAAACCATTATCGAATGGTACAGCATCGTCGGCAATGGCTACGTCCATCTGTTAAAACTGGTCGCTATACCGCTAATT
TTTATTTCTATTCTTTCCGCCATCAATAAACTGGAAAATAGCGCCGGCATCGGAAAAATGTCGCTGACGATCGTCGGATG
CATGTTATGCCTGGTGATGGTTGCCGGTTTTATCGGATTACTGACCGCTCATATACTGGGGCTTGACGCCAGCGCTTTTG
TGCACATGCCGTCAATGTTAACTACAGAAGAAGTCAATAAGACTGCCGCGGTGTCGATTCCCCAGTTAGTGACATCGCTG
ATCCCGACAAATATTTTTCTTGATCTTACGGGAGCCAGAAGTGTTTCCGTTATCGGCATCGTTATCTTCACGCTAATAGC
GGGGATCGCCCTGTTAAAGGTCAAAAAAGAGGCGCCGGAAGAAGGTCAGAAATTAAGCGCAGGCATTAACGCTATCCAGA
TCTGGGTCATGAAGATGGTACGTATCGTTATTGCATTAACGCCCTATGGCGTCATGGCATTAATGACCACCGTATTTTCA
TCATACCGCCTTGAACAATTCGCCAGCTTACTTGGTTTTATCGGCGCCTGTTATATCGCGATTTTCATGATGTTTATCGT
GCACGCCATCTTGCTGATCCTCAGCGGTAATAATCCAGCGCATTATTTCAGAATGGTCTGGCCCGTCTTAACCTTTGCGT
TTGTCTCCCGCAGCAGCGCAGCCTCTATTCCGCTGGCCATTTCCGCCCAGGAAAAATTTGGCGTACAAAGCACCATTGCC
AATATTTCCGCCTCGTTTGGCTCCAGTATGGGGCAAAATGGCTGCGCCGGGATTTATCCGGCTATTATGGTAGCGATGAT
TGCGCCCACCATCGGCATCGATCCGCTCTCGCTGCATTTTCTGGCCGCGATGTTGCCTGCCATTGCGCTAGGGTCTATTG
GCGTAGCCGGCGTCGGCGGCGGTGGTACGTTCGCGGCGCTGATTGTCCTGTCGACGTTGAATTTTCCCGTTGCGCTGGTC
GGTATTTTTATTGCCATCGAACCTATCGTTGATATGGCCCGCACGGCTCTGAACGTTAACGGATCGATGATGTCAGGTGT
GCTGGCTAACCGTATTTTGAATAATAATAGGGCTGACGACATGCCAGCGGTTATTGACAGACCTTAG

Upstream 100 bases:

>100_bases
CTTTATAATCCGCTGCGGTTCTATAACTCAGTTTGAGCTATAGGTTTATGTAAACTCTTTCCGGCATTTCAGGTGCTGAA
TGAGGCAAGAGGCTTAAAAT

Downstream 100 bases:

>100_bases
TTTTTTACGCGCCCGGAAAAGAAAAACCCTTAAGTCTGTTCAATACAGGCTTAAGGGTTCCGGCCCCATCCGGCGCTTAT
CTCCGGCACTCTTAATGGCT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLI
FISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGLLTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL
IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS
SYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSGNNPAHYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIA
NISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALV
GIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNNRADDMPAVIDRP

Sequences:

>Translated_448_residues
MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLI
FISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGLLTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL
IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS
SYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSGNNPAHYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIA
NISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALV
GIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNNRADDMPAVIDRP
>Mature_448_residues
MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLI
FISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGLLTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL
IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS
SYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSGNNPAHYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIA
NISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALV
GIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNNRADDMPAVIDRP

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI223468566, Length=287, Percent_Identity=26.1324041811847, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI223468564, Length=285, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI5032093, Length=287, Percent_Identity=26.1324041811847, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI66773030, Length=252, Percent_Identity=27.3809523809524, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI21314632, Length=267, Percent_Identity=23.9700374531835, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1788024, Length=452, Percent_Identity=44.9115044247788, Blast_Score=363, Evalue=1e-101,
Organism=Escherichia coli, GI1790514, Length=406, Percent_Identity=24.384236453202, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789947, Length=423, Percent_Identity=22.4586288416076, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193206654, Length=425, Percent_Identity=23.2941176470588, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17537407, Length=417, Percent_Identity=23.021582733813, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71983106, Length=447, Percent_Identity=23.489932885906, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71983099, Length=447, Percent_Identity=23.489932885906, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71996953, Length=467, Percent_Identity=20.9850107066381, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24583025, Length=474, Percent_Identity=23.2067510548523, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI17137668, Length=474, Percent_Identity=23.2067510548523, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24583023, Length=474, Percent_Identity=23.2067510548523, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 47434; Mature: 47434

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEW
CEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH
YSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSLIPTNIFLDLTGARSVSVIGI
HHHHHHCCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
VIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSGNNPAHYFRMVWPVLTFAFVSRSSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ASIPLAISAQEKFGVQSTIANISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHF
CCCCEEEECHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
LAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALVGIFIAIEPIVDMARTALNVN
HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GSMMSGVLANRILNNNRADDMPAVIDRP
HHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEW
CEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHH
YSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSLTIVGCMLCLVMVAGFIGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSLIPTNIFLDLTGARSVSVIGI
HHHHHHCCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
VIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSGNNPAHYFRMVWPVLTFAFVSRSSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ASIPLAISAQEKFGVQSTIANISASFGSSMGQNGCAGIYPAIMVAMIAPTIGIDPLSLHF
CCCCEEEECHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
LAAMLPAIALGSIGVAGVGGGGTFAALIVLSTLNFPVALVGIFIAIEPIVDMARTALNVN
HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GSMMSGVLANRILNNNRADDMPAVIDRP
HHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]