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The map label for this gene is yeaM [H]

Identifier: 29141628

GI number: 29141628

Start: 1224070

End: 1224864

Strand: Direct

Name: yeaM [H]

Synonym: t1159

Alternate gene names: 29141628

Gene position: 1224070-1224864 (Clockwise)

Preceding gene: 29141625

Following gene: 29141633

Centisome position: 25.54

GC content: 54.97

Gene sequence:

>795_bases
ATGATTGGCCTGAGACTGGACGGTTACGATCCCGACCTTCACCACGATGCCGCTGTGGCCTTTTGTATTCGCGCCAGGGA
TGATGAACTGTTTAGCCCTCGCCATCAGCATCGCAAGGGACAGTTGATCCTCGCTCTGCACGGCGCGATCACCTGTGAGG
TGGAAAATGCGATGTGGATGGTTCCGCCCCAGTATGCCGTCTGGCTCCCCGGCTCGCTGCCGCACAGTAATCATGTGACC
GCAGGGGCGGAGCTGTGCTTTTTATTTATTGAACCTGCGGCGGTCGTCATGCCGGAGCGTTGCTGCACGCTGAAAATTTC
GCCGTTATGCCGGGAGTTGATTTTGTCGCTGGCGCGCAGAACCGATTCCGAAAGAGCGCAAATGCCAACGCAGCGCCTTA
TTCAGGTGTTGTTTGATGAACTGCCGCAGCAGCCGCAGGAACAATTGCAATTACCAGTATCGGGGCATCCGAAAATTCGC
CAAATGGTTGAGACAATGGCGCAGGAGCACGCGCGATGGAATACGTTAGGGCAGTGGGCCAGCGTATTCGCGATGAGCGA
GCGTAACCTTGCCCGGCTGGTCGTCAAAGAGACGGGACTCAGCTTTCGTCGCTGGCGTCATCAATTACAATTAATTCTGG
CGCTACAAGCGCTGATCGCGGGACGTAATGTACAACAGACGGCGCAAATGCTGGGTTATGATTCTACCACGGCATTCATT
ACGATGTTTAAAAAAGGCCTGGGGCAGACCCCAGGCCAGTATCTGACGGGCGAGTTACTGCTTTCCCACAATTAA

Upstream 100 bases:

>100_bases
CGTTTTCTCATCTCGTCAGGCGAGGCGATACCTTAACAGTTTTTACTGTTTGGATGAATCAAGCTAAAATGACAATTTAT
CGCTAAAATCGGACAATATA

Downstream 100 bases:

>100_bases
AGAGACCAGCCCCGCCGCAATCAGTGGGCCGACCGGCACGCCGCGAAACAGCGCGACGCCAAGTACCGTACCGACCAGCA
GCCCGGCGACGAGCTGCGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLILALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVT
AGAELCFLFIEPAAVVMPERCCTLKISPLCRELILSLARRTDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR
QMVETMAQEHARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFI
TMFKKGLGQTPGQYLTGELLLSHN

Sequences:

>Translated_264_residues
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLILALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVT
AGAELCFLFIEPAAVVMPERCCTLKISPLCRELILSLARRTDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR
QMVETMAQEHARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFI
TMFKKGLGQTPGQYLTGELLLSHN
>Mature_264_residues
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLILALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVT
AGAELCFLFIEPAAVVMPERCCTLKISPLCRELILSLARRTDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR
QMVETMAQEHARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFI
TMFKKGLGQTPGQYLTGELLLSHN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=252, Percent_Identity=76.1904761904762, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29877; Mature: 29877

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLILALHGAITCEVENAMWM
CCEEEECCCCCCCCHHHHHHHEEECCCCCCCCCHHHCCCCCEEEEEECEEEEEECCCEEE
VPPQYAVWLPGSLPHSNHVTAGAELCFLFIEPAAVVMPERCCTLKISPLCRELILSLARR
CCCCEEEECCCCCCCCCCCCCHHHEEEEEECCHHHHCCCCCCEEEECHHHHHHHHHHHHC
TDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIRQMVETMAQEHARWNTLGQWA
CCHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFI
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
TMFKKGLGQTPGQYLTGELLLSHN
HHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLILALHGAITCEVENAMWM
CCEEEECCCCCCCCHHHHHHHEEECCCCCCCCCHHHCCCCCEEEEEECEEEEEECCCEEE
VPPQYAVWLPGSLPHSNHVTAGAELCFLFIEPAAVVMPERCCTLKISPLCRELILSLARR
CCCCEEEECCCCCCCCCCCCCHHHEEEEEECCHHHHCCCCCCEEEECHHHHHHHHHHHHC
TDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIRQMVETMAQEHARWNTLGQWA
CCHHHHHCCHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFI
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
TMFKKGLGQTPGQYLTGELLLSHN
HHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]