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The map label for this gene is yodA [H]

Identifier: 29141610

GI number: 29141610

Start: 1213004

End: 1213654

Strand: Direct

Name: yodA [H]

Synonym: t1141

Alternate gene names: 29141610

Gene position: 1213004-1213654 (Clockwise)

Preceding gene: 29141609

Following gene: 29141611

Centisome position: 25.31

GC content: 45.93

Gene sequence:

>651_bases
TTGGTGATTCATTTAAAAAAACTGACAATGCTTCTGGGAATGCTGTTGGTCAATAGTCCTGCCTTCGCGCATGGTCATCA
TGCTCATGGCGCGCCGATGACGGAGGTTGAGCAAAAAGCGGCAGCGGGTGTGTTTGATGACGCTAATGTACGCGATCGCG
CGCTCACCGACTGGGATGGTATGTGGCAATCCGTCTATCCTTATCTGGTCAGCGGCGAGCTGGACCCTGTCTTCAGACAA
AAGGCGAAGAAAGACCCGGAGAAAACGTTTGAGGATATTAAAGCGTATTATCGCAAAGGATACGCGACGAATGTTGAGAC
TATCGGTATTGAAAATGGCGTTATAGAATTCCATCGCGACAATAACGTTGCATCCTGTAAATACAATTATGCCGGCTATA
AAATTCTGACTTACGCATCGGGTAAAAAAGGGGTGCGCTACCTGTTCGAATGTAAAGATGCGAATAGCAAAGCGCCTAAA
TATGTTCAGTTTAGCGATCATATCATTGCCCCGCGCAAATCGGCGCACTTCCATATCTTTATGGGAAATACCTCGCAACA
GGCATTGTTGCAAGAGATGGAAAACTGGCCTACCTATTATCCTTATCAGTTAAAGGCGAATGAGGTCGTTGACGAAATGC
TACATCATTAA

Upstream 100 bases:

>100_bases
CAAAAAAGGCCACCTGCGCGGTGGCCGCTGAGTTTCTGTTGAAATAAATGCAATGTTATAATATAACAATCATCTTTCTA
AGAAAGATGAGGGTAACGTT

Downstream 100 bases:

>100_bases
GTCTGATTGCAATGTTAAAAGCTCGCTATGAATAGCGAGCTTTTTTTCTGCCGTTATGCCATATTTCTGGCAATCAATAT
AAAAAATACCTGCGCCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Cadmium-induced protein YodA [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH

Sequences:

>Translated_216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
>Mature_216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH

Specific function: May be involved in stress response [H]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=216, Percent_Identity=72.2222222222222, Blast_Score=349, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 24695; Mature: 24695

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDG
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
MWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRD
HHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECC
NNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIF
CCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCEECCCCCCEEEEE
MGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
ECCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC
>Mature Secondary Structure
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDG
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
MWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRD
HHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECC
NNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIF
CCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCEECCCCCCEEEEE
MGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
ECCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]