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The map label for this gene is pagD [H]

Identifier: 29141587

GI number: 29141587

Start: 1198330

End: 1198593

Strand: Reverse

Name: pagD [H]

Synonym: t1116

Alternate gene names: 29141587

Gene position: 1198593-1198330 (Counterclockwise)

Preceding gene: 29141591

Following gene: 29141586

Centisome position: 25.01

GC content: 42.05

Gene sequence:

>264_bases
ATGAAACATCATGCTTTTATGCTTTGGTCATTACTTATTTTTTCATTCCATGTTTTGGCCAGTTCAGACCATTGTTCTGG
TTTACAACAGGCATCATGGGAAATTTTTATCTACGATTTTGGTAGTAAAACCCCGCAACCACCTACAAATACCGATAAAA
AGCAAGCCAGGCAGATTAGTTCACCATCCTGCCCGACGGCAAAACCCATGATGTCCGCACCAACCAACGACGCCAGGAAA
GGGAATACTTTCTCCAGAACATAA

Upstream 100 bases:

>100_bases
TATTAAGAGTGGTTAACTCTTCGTTGAATAAAAAATGCCAATGACGTCCCATAATTAATTAGATGAACTTCGCAAGTCAT
TACATATAACAGGAGGTGCT

Downstream 100 bases:

>100_bases
TGTTATTTATCTACAATGGTGCCGAACGACTACTTTTAGCCATCCGGAAATCTTGATTGCCATCAAATATAGCTGGCATT
ATTTTTCCTGACGTGTATAG

Product: outer membrane virulence protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARK
GNTFSRT

Sequences:

>Translated_87_residues
MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARK
GNTFSRT
>Mature_87_residues
MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARK
GNTFSRT

Specific function: Putative function in virulence. Could be involved in promoting S.typhimurium survival within macrophages [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9745; Mature: 9745

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQIS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
SPSCPTAKPMMSAPTNDARKGNTFSRT
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQIS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
SPSCPTAKPMMSAPTNDARKGNTFSRT
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665482; 11677609 [H]