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The map label for this gene is cspH

Identifier: 29141586

GI number: 29141586

Start: 1197986

End: 1198198

Strand: Reverse

Name: cspH

Synonym: t1115

Alternate gene names: 29141586

Gene position: 1198198-1197986 (Counterclockwise)

Preceding gene: 29141587

Following gene: 29141585

Centisome position: 25.0

GC content: 46.48

Gene sequence:

>213_bases
TTGTCTCGTAAAATGACAGGAATTGTCAAAACCTTTGATTGTAAGAGCGGTAAAGGTCTCATCACCCCCTCCGATGGACG
CAAAGATGTTCAGGTCCACATTTCAGCATGTCGCCAACACGAAACAGAAGCTCTTATCCCCGGTATACGCGTTGAGTTTT
GTCGTATTAATGGACTCCGCGGACCTACCGCCGCCAACGTTTATCTTTCATAA

Upstream 100 bases:

>100_bases
ACTTTTAGCCATCCGGAAATCTTGATTGCCATCAAATATAGCTGGCATTATTTTTCCTGACGTGTATAGTGCGCCTCGTT
ATCCCCATTAAGGAATTTGT

Downstream 100 bases:

>100_bases
TTCGTCACCCGGCATTTTTTCAGAAAAATTTAGCGAGTACGTATACCTCCGCAGTCTGCTATGAGGCTTTGCCTGAAAGG
CTGCAGAATGTTTTCAGTGG

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS

Sequences:

>Translated_70_residues
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS
>Mature_69_residues
SRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI2367112, Length=70, Percent_Identity=81.4285714285714, Blast_Score=120, Evalue=2e-29,
Organism=Escherichia coli, GI1787840, Length=70, Percent_Identity=77.1428571428572, Blast_Score=115, Evalue=6e-28,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=52.2388059701493, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787839, Length=70, Percent_Identity=47.1428571428571, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=50.7462686567164, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=49.2537313432836, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=51.5625, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): CSPH_SALTI (P0A1E0)

Other databases:

- EMBL:   AL627271
- EMBL:   AE014613
- RefSeq:   NP_456272.1
- RefSeq:   NP_804928.1
- ProteinModelPortal:   P0A1E0
- SMR:   P0A1E0
- GeneID:   1070486
- GeneID:   1248245
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1115
- KEGG:   sty:STY1881
- HOGENOM:   HBG717773
- OMA:   VHISAFS
- ProtClustDB:   PRK15463
- BioCyc:   SENT209261:T1115-MONOMER
- BioCyc:   SENT220341:STY1881-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7660; Mature: 7529

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR
CCCCCCCEEEEEECCCCCEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC
>Mature Secondary Structure 
SRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR
CCCCCCEEEEEECCCCCEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504