Click here to switch to the map view.

The map label for this gene is flhC [H]

Identifier: 29141435

GI number: 29141435

Start: 1039791

End: 1040375

Strand: Direct

Name: flhC [H]

Synonym: t0953

Alternate gene names: 29141435

Gene position: 1039791-1040375 (Clockwise)

Preceding gene: 29141434

Following gene: 29141436

Centisome position: 21.7

GC content: 50.26

Gene sequence:

>585_bases
ATGATAATGAGCGAAAAAAGCATTGTTCAGGAAGCTCGCGATATCCAGTTGGCGATGGAGTTGATTAATCTTGGCGCTCG
TCTACAAATGCTGGAAAGCGAAACACAGCTCAGCCGTGGTCGCCTCATCAGGCTGTACAAAGAATTACGCGGTAGCCCGC
CGCCTAAAGGGATGCTGCCATTTTCGACAGACTGGTTTATGACCTGGGAGCAAAATATTCATGCCTCCATGTTCTGCAAC
GCCTGGCAATTTTTACTGAAGACCGGCTTATGCAGCGGTGTGGATGCGGTGATTAAAGCTTATCGGCTTTATCTTGAGCA
GTGTCCGCAACCGCCTGAAGGGTCGTTGTTGGCGCTGACTCGCGCATGGACGCTGGTGCGTTTTGTTGAAAGTGGGTTGC
TTGAATTGTCGAGCTGTAACTGCTGCGGTGGGAACTTTATTACCCATGCGCATCAGCCCGTAGGCAGCTTTGCGTGTAGT
TTATGCCAGCCGCCATCCCGCGCAGTAAAAAGACGTAAACTTTCCCGAGATGCTGCCGATATTATTCCACAACTGCTGGA
TGAACAGATCGAACAGGCTGTTTAA

Upstream 100 bases:

>100_bases
AGGATTCGCGCGTCGATGACTTACAGCAGATTCACACAGGTATCATGCTTTCAACGCGTCTGCTCAATGAAGTGGACGAT
ACGGCGCGTAAGAAAAGGGC

Downstream 100 bases:

>100_bases
CCGAAACGGTGTGGACAAACACTCCAGCAGCGGTAAGCCATTACCGCTGCTTTTTTTTTTTGCCTTGCCTTCGCGTTAAT
CGCCCGACTGCGCATCCTGT

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCN
AWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGSLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACS
LCQPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV

Sequences:

>Translated_194_residues
MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCN
AWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGSLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACS
LCQPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV
>Mature_194_residues
MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCN
AWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGSLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACS
LCQPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=192, Percent_Identity=93.2291666666667, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21814; Mature: 21814

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
FSTDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGSLLALT
CCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHH
RAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAAD
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHH
IIPQLLDEQIEQAV
HHHHHHHHHHHHCC
>Mature Secondary Structure
MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
FSTDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGSLLALT
CCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHH
RAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAAD
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHH
IIPQLLDEQIEQAV
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]