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The map label for this gene is flhD [H]

Identifier: 29141434

GI number: 29141434

Start: 1039444

End: 1039794

Strand: Direct

Name: flhD [H]

Synonym: t0952

Alternate gene names: 29141434

Gene position: 1039444-1039794 (Clockwise)

Preceding gene: 29141431

Following gene: 29141435

Centisome position: 21.69

GC content: 48.15

Gene sequence:

>351_bases
ATGGGAACAATGCATACATCCGAGTTGCTAAAACACATTTATGACATCAATTTGTCATATTTACTCCTTGCACAGCGTTT
GATCGTCCAGGATAAAGCATCTGCGATGTTCCGCCTCGGTATCAACGAAGAGATGGCAAACACACTGGGCGCGTTGACCC
TGCCGCAGATGGTCAAACTGGCGGAGACGAACCAGTTAGTTTGTCATTTCCGGTTTGACGATCATCAGACGATCACCCGT
TTGACTCAGGATTCGCGCGTCGATGACTTACAGCAGATTCACACAGGTATCATGCTTTCAACGCGTCTGCTCAATGAAGT
GGACGATACGGCGCGTAAGAAAAGGGCATGA

Upstream 100 bases:

>100_bases
CGCTGCTATGCATTTGACCTTTTTGCTTCTTTTACCGGGCCTTCCCGGCGACATCACGGGGTGCGGCTACGTCGCACAAA
AATAAAGTTGGTTATTCTGG

Downstream 100 bases:

>100_bases
TAATGAGCGAAAAAAGCATTGTTCAGGAAGCTCGCGATATCCAGTTGGCGATGGAGTTGATTAATCTTGGCGCTCGTCTA
CAAATGCTGGAAAGCGAAAC

Product: transcriptional activator FlhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MGTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITR
LTQDSRVDDLQQIHTGIMLSTRLLNEVDDTARKKRA

Sequences:

>Translated_116_residues
MGTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITR
LTQDSRVDDLQQIHTGIMLSTRLLNEVDDTARKKRA
>Mature_115_residues
GTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRL
TQDSRVDDLQQIHTGIMLSTRLLNEVDDTARKKRA

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems. Together with FlhC it acts as an activator of class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family [H]

Homologues:

Organism=Escherichia coli, GI145693151, Length=116, Percent_Identity=89.6551724137931, Blast_Score=208, Evalue=8e-56,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007911
- ProDom:   PD015582 [H]

Pfam domain/function: PF05247 FlhD [H]

EC number: NA

Molecular weight: Translated: 13296; Mature: 13164

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMANTLGALTLPQMVKL
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AETNQLVCHFRFDDHQTITRLTQDSRVDDLQQIHTGIMLSTRLLNEVDDTARKKRA
HCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMANTLGALTLPQMVKL
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AETNQLVCHFRFDDHQTITRLTQDSRVDDLQQIHTGIMLSTRLLNEVDDTARKKRA
HCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA