| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is rfbK [H]
Identifier: 29141290
GI number: 29141290
Start: 883281
End: 884714
Strand: Direct
Name: rfbK [H]
Synonym: t0790
Alternate gene names: 29141290
Gene position: 883281-884714 (Clockwise)
Preceding gene: 29141289
Following gene: 29141291
Centisome position: 18.43
GC content: 40.52
Gene sequence:
>1434_bases ATGAACGTAGTTAATAATAGCCGTGATGTTATTCATTCATCAGGTATTGTGTTTGGAACGAGTGGGGCTCGCGGTCTTGT AAAAGATTTTACACCTCAGGTATGTGCTGCTTTTACGGTTTCATTTGTTGCCGTTATGCAGGAACATTTTTCCTTTGATA CCGTAGCATTGGCAATAGATAATCGTCCAAGTAGTTATGGGATGGCTCAGGCGTGTGCTGCTGCATTGGCAGATAAAGGC GTTAACTGTATTTTTTATGGTGTGGTACCAACCCCGGCTTTGGCCTTTCAGTCTATGTCTGACAATATGCCTGCGATAAT GGTTACGGGAAGTCATATTCCATTCGAGCGGAACGGCCTCAAGTTTTATCGTCCTGATGGTGAAATCACGAAACATGATG AGGCTGCGATCCTTAGTGTTGAAGATACGTGCAGCCATTTAGAGCTTAAAGAACTCATAGTTTCAGAAATGGCTGCTGTT AATTATATATCTCGTTATACATCTTTATTTTCTACTCCATTCCTGAAAAATAAGCGTATTGGTATTTACGAACATTCAAG CGCTGGGCGTGATCTTTATAAGCCTTTATTTATTGCATTGGGGGCTGAAGTCATTAGCTTGGGTAGAAGCGATAACTTTG TACCTATAGATACAGAGGCTGTAAGCAAAGAGGATCGGGAAAAAGCACGCTCATGGGCTAAAGAGTTCGATTTAGATGCC ATATTCTCAACAGATGGGGATGGTGATCGTCCTCTTATTGCTGATGAGGCCGGTCAGTGGTTAAGAGGCGATATATTAGG TCTATTATGTTCACTTGCATTGGGGGCAGAAGCGGTCGCTATTCCTGTTAGTTGTAATAGCATAATTTCTTCTGGCCGCT TTTTTAAACATGTTAAACTTACGAAAATTGGCTCGCCTTATGTTATCGAAGCTTTTAATGAATTATCTCGGAGTTATAGT CGTATTGTCGGTTTTGAAGCCAATGGCGGTTTTTTATTAGGAAGCGATATCTGTATTAACGAGCAGAATCTTCATGCCTT ACCAACTCGTGATGCTGTATTACCAGCAATAATGCTACTTTACAAAAGTAGGAATATCAGCATTAGCGCTTTAGTCAATG AACTCCCAACTCGTTACACCCATTCTGACAGATTACAGGGAATTACGACTGATAAAAGTCAATCCTTAATTAGTATGGGC AGAGAAAATCTGAGCAACCTCTTAAGCTATATTGGTTTGGAGAATGAAGGTGCAATTTCTACAGATATGACAGATGGTAT GCGAATTACCTTACGTGATGGATGTATTGTGCATTTGCGCGCCTCTGGTAATGCACCTGAGTTACGCTGCTATGCAGAAG CTAATTTATTAAATAGAGCTCAGGATCTTGTAAATATAACGCTTGCTAATATTAAAAAACGATGCTTGCCGTAA
Upstream 100 bases:
>100_bases ATCCCCCTGCAGTTAATTGAGATTCAATCAGGTACCTATCTTGGTGAGGATGATATTATTCGTTTAGAACAACGTTCTGG ATTTTCGAAGGAGTGGACTA
Downstream 100 bases:
>100_bases AAGAATTGAATGTTATTTACTTAATATGCCTATTTTATTTACATTATGCACGGTCAGAGGGTGAGGATTAAATGGATAAT ATTGATAATAAGTATAATCC
Product: phosphomannomutase
Products: NA
Alternate protein names: PMM [H]
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVAVMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKG VNCIFYGVVPTPALAFQSMSDNMPAIMVTGSHIPFERNGLKFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAV NYISRYTSLFSTPFLKNKRIGIYEHSSAGRDLYKPLFIALGAEVISLGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDA IFSTDGDGDRPLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKLTKIGSPYVIEAFNELSRSYS RIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLLYKSRNISISALVNELPTRYTHSDRLQGITTDKSQSLISMG RENLSNLLSYIGLENEGAISTDMTDGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP
Sequences:
>Translated_477_residues MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVAVMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKG VNCIFYGVVPTPALAFQSMSDNMPAIMVTGSHIPFERNGLKFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAV NYISRYTSLFSTPFLKNKRIGIYEHSSAGRDLYKPLFIALGAEVISLGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDA IFSTDGDGDRPLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKLTKIGSPYVIEAFNELSRSYS RIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLLYKSRNISISALVNELPTRYTHSDRLQGITTDKSQSLISMG RENLSNLLSYIGLENEGAISTDMTDGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP >Mature_477_residues MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVAVMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKG VNCIFYGVVPTPALAFQSMSDNMPAIMVTGSHIPFERNGLKFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAV NYISRYTSLFSTPFLKNKRIGIYEHSSAGRDLYKPLFIALGAEVISLGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDA IFSTDGDGDRPLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKLTKIGSPYVIEAFNELSRSYS RIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLLYKSRNISISALVNELPTRYTHSDRLQGITTDKSQSLISMG RENLSNLLSYIGLENEGAISTDMTDGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP
Specific function: Involved in GDP-mannose biosynthesis which serves as the activated sugar nucleotide precursor for mannose residues in cell surface polysaccharides. This enzyme participates in synthesis of the LPS group B O antigen [H]
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1789566, Length=259, Percent_Identity=32.4324324324324, Blast_Score=77, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.8 [H]
Molecular weight: Translated: 52024; Mature: 52024
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVAVMQEHFSFDTVALAID CCCCCCCCHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC NRPSSYGMAQACAAALADKGVNCIFYGVVPTPALAFQSMSDNMPAIMVTGSHIPFERNGL CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCC KFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAVNYISRYTSLFSTPFLKNKRI EEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE GIYEHSSAGRDLYKPLFIALGAEVISLGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDA EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCHHHHHHHHHHHHHCCCCE IFSTDGDGDRPLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKL EEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEE TKIGSPYVIEAFNELSRSYSRIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLL EECCCCHHHHHHHHHHHHHHHHEEEECCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHH YKSRNISISALVNELPTRYTHSDRLQGITTDKSQSLISMGRENLSNLLSYIGLENEGAIS HHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TDMTDGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP CCCCCCEEEEEECCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVAVMQEHFSFDTVALAID CCCCCCCCHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC NRPSSYGMAQACAAALADKGVNCIFYGVVPTPALAFQSMSDNMPAIMVTGSHIPFERNGL CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCC KFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAVNYISRYTSLFSTPFLKNKRI EEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE GIYEHSSAGRDLYKPLFIALGAEVISLGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDA EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCHHHHHHHHHHHHHCCCCE IFSTDGDGDRPLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKL EEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEE TKIGSPYVIEAFNELSRSYSRIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLL EECCCCHHHHHHHHHHHHHHHHEEEECCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHH YKSRNISISALVNELPTRYTHSDRLQGITTDKSQSLISMGRENLSNLLSYIGLENEGAIS HHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TDMTDGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP CCCCCCEEEEEECCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1710759; 11677609 [H]