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The map label for this gene is rfbH [H]

Identifier: 29141282

GI number: 29141282

Start: 873701

End: 875014

Strand: Direct

Name: rfbH [H]

Synonym: t0782

Alternate gene names: 29141282

Gene position: 873701-875014 (Clockwise)

Preceding gene: 29141281

Following gene: 29141283

Centisome position: 18.23

GC content: 44.29

Gene sequence:

>1314_bases
ATGACAGCAAATAACCTGCGTGAGCAAATCTCTCAGCTTGTCGCTCAGTATGCGAATGAGGCATTGAGCCCGAAACCTTT
TGTTGCAGGTGCAAGCGTTGTACCTCCTTCCGGGAAGGTTATTGGTGCCAAAGAGTTACAATTGATGGTTGAGGCGTCTC
TTGATGGATGGCTAACTACTGGTCGTTTCAATGATGCCTTTGAGAAAAAACTTGGGGAATTTATTGGAGTTCCTCATGTT
TTAACGACTACATCTGGCTCTTCGGCAAACTTGCTGGCACTGACTGCGCTGACTTCCCCAAAATTAGGCGAGCGTGCTCT
CAAACCTGGTGATGAGGTTATTACTGTCGCTGCTGGCTTCCCGACTACAGTTAACCCGGCGATCCAGAATGGTTTAATAC
CGGTATTCGTGGATGTTGATATCCCGACATATAATATCGATGCCTCTCTCATTGAAGCTGCAGTTACTGAGAAATCAAAA
GCGATAATGATCGCTCATACACTCGGTAATGCATTTAACCTGAGTGAAGTTCGTCGGATTGCCGATAAATATAACTTATG
GTTGATTGAAGACTGCTGTGATGCCCTTGGGACGACTTATGAAGGCCGGATGGTAGGTACCTTTGGTGACATCGGAACCG
TTAGTTTTTATCCGGCTCACCATATCACAATGGGTGAAGGCGGTGCTGTATTCACCAAGTCAGGTGAACTGAAGAAAATT
ATTGAGTCGTTCCGTGACTGGGGCCGGGATTGTTATTGTGCGCCAGGATGCGATAACACCTGCGGTAAACGTTTTGGTCA
GCAATTGGGGTCACTTCCTCAAGGCTATGATCACAAATATACTTATTCCCACCTCGGATATAATCTCAAAATCACGGACA
TGCAGGCAGCATGTGGTCTGGCTCAGTTAGAACGCGTGGAAGAGTTTGTAGAGCAGCGTAAAGCTAATTTTTCCTATTTG
AAACAAGGTTTGCAATCTTGCACTGAATTCCTCGAATTACCAGAAGCAACAGAGAAATCAGATCCATCCTGGTTTGGCTT
CCCTATCACCCTGAAAGAAACTAGCGGTGTTAACCGTGTCGAACTGGTGAAATTCCTTGATGAAGCAAAAATCGGTACAC
GTTTACTGTTTGCTGGAAATCTGATTCGCCAACCGTATTTTGCTAATGTGAAATATCGTGTAGTGGGTGAGTTGACAAAT
ACCGACCGTATAATGAATCAAACGTTCTGGATTGGTATTTATCCAGGCTTGACTACAGAGCATTTAGATTATGTAGTTAG
CAAGTTTGAAGAGTTCTTTGGTTTGAATTTCTAA

Upstream 100 bases:

>100_bases
GGATTCGCGGCGAAGATATGTTGATTTGTTCAAAGCGTGAAATCAGCGACTATATGTCTGCAACTACTCGTTAAGAAAAT
AAGTTTAAGGAATCAAAGTA

Downstream 100 bases:

>100_bases
TTTTTGAGGGGGGGGGATTCCCCTCTATGATTTCATGAAAATTCTAATAATGGGAGCGTTTGGGTTCCTTGGATCACGAC
TTACATCCTACTTCGAAAGT

Product: dehydratase RfbH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MTANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAKELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHV
LTTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSK
AIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKI
IESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYL
KQGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTN
TDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF

Sequences:

>Translated_437_residues
MTANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAKELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHV
LTTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSK
AIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKI
IESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYL
KQGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTN
TDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF
>Mature_436_residues
TANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAKELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHVL
TTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSKA
IMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKII
ESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYLK
QGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTNT
DRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=404, Percent_Identity=28.960396039604, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI2367285, Length=343, Percent_Identity=30.3206997084548, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 48102; Mature: 47971

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAKELQLMVEASLDGWLTT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHEEEEEECCCCCEEC
GRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCHHHCCCCCCEEEEEECC
PTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSKAIMIAHTLGNAFNLSEVRRI
CCCCCHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHH
ADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKI
HHHHCEEEHHHHHHHHCCCCCCEEEECCCCCCCEEEECCEEEEECCCCEEEECCCHHHHH
IESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHHHH
AQLERVEEFVEQRKANFSYLKQGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHH
ELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTNTDRIMNQTFWIGIYPGLTTE
HHHHHHHHHHHCEEEEEECHHHCCCCCCCEEEEEEECCCCHHHHHCCEEEEEECCCCCHH
HLDYVVSKFEEFFGLNF
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAKELQLMVEASLDGWLTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHEEEEEECCCCCEEC
GRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCHHHCCCCCCEEEEEECC
PTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSKAIMIAHTLGNAFNLSEVRRI
CCCCCHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHH
ADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKI
HHHHCEEEHHHHHHHHCCCCCCEEEECCCCCCCEEEECCEEEEECCCCEEEECCCHHHHH
IESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHHHH
AQLERVEEFVEQRKANFSYLKQGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHH
ELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTNTDRIMNQTFWIGIYPGLTTE
HHHHHHHHHHHCEEEEEECHHHCCCCCCCEEEEEEECCCCHHHHHCCEEEEEECCCCCHH
HLDYVVSKFEEFFGLNF
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]