Click here to switch to the map view.

The map label for this gene is yfgC [H]

Identifier: 29140891

GI number: 29140891

Start: 431699

End: 433162

Strand: Reverse

Name: yfgC [H]

Synonym: t0363

Alternate gene names: 29140891

Gene position: 433162-431699 (Counterclockwise)

Preceding gene: 29140895

Following gene: 29140890

Centisome position: 9.04

GC content: 57.1

Gene sequence:

>1464_bases
ATGTTCAGGCAGTTGAAAAAAAACCTGGTGGCAACCCTCATTGCAGCATTGGCTCTCGGTCAGGTCGCGCCCGCATTTGC
CGACCCTGCCGACACGCTGCCCGATATGGGAACCTCGGCAGGAAGCACGCTTTCTATTGGACAAGAGATGCAAATGGGCG
ACTTTTATGTGCGCCAGCTACGCGGCAGCGCGCCGTTAATCAACGATCCGCTGCTGGTGCAATACATTAACGCGCTGGGG
ATGCGTCTGGTCTCGCACGCAGACTCCGTCAAAACGCCCTTCCATTTTTTCTTGATCAATAATGACGAAATCAACGCGTT
CGCGTTCTTTGGCGGCAATGTGGTGCTGCACTCGGCGCTTTTTCGCTACGCGGATAACGAAAGCCAGCTAGCTTCAGTCA
TGGCGCATGAAATTTCCCACGTTACGCAGCGCCATCTGGCGCGCGCGATGGAAGATCAAAAGCGCAGCGCGCCGCTTACC
TGGGTGGGCGCGCTGGGTTCCATTTTGCTGGCCATGGCCAGCCCACAGGCCGGTATGGCGGCGCTAACCGGTACTCTGGC
GGGAACGCGCCAGGGAATGATAAGTTTCACCCAGCAAAATGAGCAAGAGGCCGACCGTATTGGTATTCAGGTACTGCAAC
GCGCCGGATTTGACCCACAGGCGATGCCCTCTTTCCTCGAAAAACTGCTCGACCAGGCGCGTTACTCCACGCGACCGCCT
GAAATTTTGCTCACTCACCCCTTACCGGAAAGCCGCCTTGCGGATGCCCGCAACCGTGCCAACCAGATGCGCCCGGTCGT
GGTGCAATCTTCCGCCGACTTTTATTTCGCCAAAGCGCGCGCCCTGGGAATGTACAATTCCGGACGTAACCAGCTCACCA
GCGACCTGCTGGATCAGTGGTCTAAAGGCAACGTGCGTCAGCAACATGCGGCGCAATATGGCCGGGCGTTGCAGGCGATG
GAAGCGAGCAAGTACGATGAAGCGCGCAAAACGTTGCAGCCGCTATTAAGCGCAGAGCCGAACAATGCCTGGTATCTTGA
CCTCGCCACCGATATTGACCTGGGGCAGAAAAGAGCCAACGACGCGATTAATCGCCTGAAAAATGCCCGCGATCTGCGCG
TTAATCCTGTGCTGCAGTTAAACCTCGCCAATGCGTACCTCCAGGGAGGCCAGCCGAAAGCGGCGGAAACCATTCTGAAT
CGCTACACCTTTAGCCATAAAGATGACGGTAACGGCTGGGATCTGCTTGCTCAGGCCGAAGCCGCGCTGAACAACCGCGA
TCAGGAGCTGGCGGCACGCGCTGAAAGTTATGCGCTGGCGGGACGACTGGATCAGGCAATTTCACTGCTCAGCAGCGCCA
GCGCCCAGGCAAAACTGGGTAGTCAGCAACAGGCGCGTTACGATGCGCGTATCGACCAGTTGCGCCAGTTACAGGAACGC
TTCAAGCCATACACGAAAATGTAA

Upstream 100 bases:

>100_bases
GTCTGTGCTCATCACAGTTACACTTATGAAGTGTCGGAGCGTGGAACGATATTTCACGACGTTGGTCAAAGGGCTATCTC
AAAACAACAGGATAGAGGTT

Downstream 100 bases:

>100_bases
TCGCCGTTTATTAGCCGGATGGCGTCACAAGGAGAACTCATGACCGACACGATTAAAATCTACCATAACCCGCGCTGCTC
GAAGAGCCGCGACACGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTLSIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALG
MRLVSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT
WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARYSTRPP
EILLTHPLPESRLADARNRANQMRPVVVQSSADFYFAKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAM
EASKYDEARKTLQPLLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQPKAAETILN
RYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLLSSASAQAKLGSQQQARYDARIDQLRQLQER
FKPYTKM

Sequences:

>Translated_487_residues
MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTLSIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALG
MRLVSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT
WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARYSTRPP
EILLTHPLPESRLADARNRANQMRPVVVQSSADFYFAKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAM
EASKYDEARKTLQPLLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQPKAAETILN
RYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLLSSASAQAKLGSQQQARYDARIDQLRQLQER
FKPYTKM
>Mature_487_residues
MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTLSIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALG
MRLVSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT
WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARYSTRPP
EILLTHPLPESRLADARNRANQMRPVVVQSSADFYFAKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAM
EASKYDEARKTLQPLLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQPKAAETILN
RYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLLSSASAQAKLGSQQQARYDARIDQLRQLQER
FKPYTKM

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=487, Percent_Identity=92.1971252566735, Blast_Score=907, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53742; Mature: 53742

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTLSIGQEMQMGDFYVRQL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RGSAPLINDPLLVQYINALGMRLVSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCHHHHHHHH
FRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
ALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARYSTRPP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
EILLTHPLPESRLADARNRANQMRPVVVQSSADFYFAKARALGMYNSGRNQLTSDLLDQW
CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
SKGNVRQQHAAQYGRALQAMEASKYDEARKTLQPLLSAEPNNAWYLDLATDIDLGQKRAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH
DAINRLKNARDLRVNPVLQLNLANAYLQGGQPKAAETILNRYTFSHKDDGNGWDLLAQAE
HHHHHHCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AALNNRDQELAARAESYALAGRLDQAISLLSSASAQAKLGSQQQARYDARIDQLRQLQER
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FKPYTKM
HCCCCCC
>Mature Secondary Structure
MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTLSIGQEMQMGDFYVRQL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RGSAPLINDPLLVQYINALGMRLVSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCHHHHHHHH
FRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
ALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARYSTRPP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
EILLTHPLPESRLADARNRANQMRPVVVQSSADFYFAKARALGMYNSGRNQLTSDLLDQW
CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
SKGNVRQQHAAQYGRALQAMEASKYDEARKTLQPLLSAEPNNAWYLDLATDIDLGQKRAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH
DAINRLKNARDLRVNPVLQLNLANAYLQGGQPKAAETILNRYTFSHKDDGNGWDLLAQAE
HHHHHHCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
AALNNRDQELAARAESYALAGRLDQAISLLSSASAQAKLGSQQQARYDARIDQLRQLQER
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FKPYTKM
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]