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The map label for this gene is hycF [C]

Identifier: 29140861

GI number: 29140861

Start: 379142

End: 380005

Strand: Direct

Name: hycF [C]

Synonym: t0329

Alternate gene names: 29140861

Gene position: 379142-380005 (Clockwise)

Preceding gene: 29140860

Following gene: 29140862

Centisome position: 7.91

GC content: 59.61

Gene sequence:

>864_bases
ATGGTTAACCTGACGATCGATCCGGCGGTAGACGTGACGCAGGCCTGCGTCCGTCGTCGCTTTCGTTTTTCTTCCTGCCG
CGCTTGCACTGATGTTTGTCCGGCGCAGGTGTTTTCGCTGGCGCAGGGGCAGGTCAGCATAGATACGACGCGCTGCATAG
CCTGTGGCGACTGTCTGTTTGTCTGTCCTGTTGACGCCATTACCGATATCAAACCGGTTAAACGCTTTGTGCAGGGGGAT
ACGTTGGTGGGGCCGTTTTCGCTACAGGCGCCAACGGTCGATGAACTGCTTCTCTGGCACAGCCAGTACGGTATTCGCTT
TATTGATATTGCGGTGGAGCGATCGGCGCAGTGGCTGATGGCGTTGGCGGGGCTAAATTTAGCGCTGCGCCGCTACGGCG
AGCCGGGCTGGTCTTTCAAACACGTTGTCGGCGCGGAAATTAATGCCTCGCGGCGCACTCTGTTTCATGTTCCGCGCGAC
GCCATTACCCCGTGCGCCGTCGAGCCGGGGAAACGGCGTCTCAGACAGGCGTTTTCCGCGTTCAGCGAATGCGTACCCGA
AATCAGTCCGCAAGAGTGCAGGATGTGCGGCGCCTGCTGGCGAAGCTGCCCGGAAAACGTTATCCAGTTTGACGACGACA
CGCTGACGATAGCGGCGGCGCGTTGTACGGGATGCGGCGGCTGTGCGGCGGTATGTCCGCATCAGGCGCTGCGGCTGCGG
TTTGACGTGGAACCCGCCTCAACGCGGCATAGTGCGGTGCATACGCTCACCTGCGAAAGCTGCAAACGTACTTTCCATGC
TCTCACGCCTGAACACACGCACTGCGTGCTGTGTCAGTCCCCTGAGTTTGCTGTGCGCCTTTAA

Upstream 100 bases:

>100_bases
CAGGCGGTCTGCGAAACGCCAGAGGGACGCTGGTGGCGGGCAGCGTATTGCTGCTTATCGGCGAGATTATGCTGCGCTAC
GTCTTCTTTAGTATTGGCTG

Downstream 100 bases:

>100_bases
CTTTTGTTGCTAATGCTCATTTTATTTTAAAAAAATGTTACCTGCATCCATAGGCAATTGATGGGATGCTCTTTATAATC
CGCGCCTGACATAACAACAG

Product: polyferredoxin

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Ferredoxin

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGD
TLVGPFSLQAPTVDELLLWHSQYGIRFIDIAVERSAQWLMALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD
AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLR
FDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCVLCQSPEFAVRL

Sequences:

>Translated_287_residues
MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGD
TLVGPFSLQAPTVDELLLWHSQYGIRFIDIAVERSAQWLMALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD
AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLR
FDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCVLCQSPEFAVRL
>Mature_287_residues
MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGD
TLVGPFSLQAPTVDELLLWHSQYGIRFIDIAVERSAQWLMALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD
AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLR
FDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCVLCQSPEFAVRL

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31689; Mature: 31689

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLF
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEE
VCPVDAITDIKPVKRFVQGDTLVGPFSLQAPTVDELLLWHSQYGIRFIDIAVERSAQWLM
EECCHHHHCCHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHH
ALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRDAITPCAVEPGKRRLRQAFSA
HHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHH
FSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLR
HHHHCCCCCHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCCHHHHCCCCCEEEE
FDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCVLCQSPEFAVRL
EECCCCCCCHHHHEEEEHHHHHHHHHHCCCCCCEEEEECCCCCEEEC
>Mature Secondary Structure
MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLF
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEE
VCPVDAITDIKPVKRFVQGDTLVGPFSLQAPTVDELLLWHSQYGIRFIDIAVERSAQWLM
EECCHHHHCCHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHH
ALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRDAITPCAVEPGKRRLRQAFSA
HHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHH
FSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLR
HHHHCCCCCHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCCHHHHCCCCCEEEE
FDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCVLCQSPEFAVRL
EECCCCCCCHHHHEEEEHHHHHHHHHHCCCCCCEEEEECCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA