Click here to switch to the map view.

The map label for this gene is rseB [H]

Identifier: 29140806

GI number: 29140806

Start: 310500

End: 311456

Strand: Direct

Name: rseB [H]

Synonym: t0272

Alternate gene names: 29140806

Gene position: 310500-311456 (Clockwise)

Preceding gene: 29140805

Following gene: 29140807

Centisome position: 6.48

GC content: 54.65

Gene sequence:

>957_bases
ATGAAGCAACTTTGGTTTGCCATGTCCCTTGTGGCGGCTAGCCTGTTCTTCTCAGTAAACGCCTCGGCCGACCCTGCGTC
CGGGGCGTTATTGCAGCAGATGAACATCGCCAGTCAGTCACTGAATTACGAGCTGTCATTCGTCAGCATCACGAAACAAG
GCGTTGAATCTCTGCGTTATCGACACGCACGCCTGGATAGTCGCCCGCTTGCGCAATTGCTACAGTTGGACGGTCCCCGC
CGGGAGGTCGTACAGCGTGGTAATGAAATCAGTTATTTTGAACCGGGCCTTGAGCCGTTCACCCTGAACGGTGATTATAT
TGTCGATTCTCTGCCTTCCCTGATTTACACCGATTTCAAGCGTCTGGCGCCTTACTACGACTTTATTTCCGTCGGACGCA
CCCGTATCGCAGACAGATTATGCGAAGTTATCCGCGTTGTGGCGCGCGATGGTACGCGTTACAGCTATATCGTCTGGATG
GACATGGACACCAAACTACCGATGCGCGTTGATCTGCTGGATCGCGACGGCGAGACGCTGGAGCAGTTCCGCGTTATTGC
GTTCACGGTGAGTCAGGATATCGGCAGCACCATGCAGGCGCTGGCGAAGGCGAATCTGCCGCCGCTGCTTTCTGTTCCCG
GTGGCGAAAAAACGAAATTTAACTGGAATCCATCCTGGGTGCCGCAAGGCTTTAGCGAAGTTTCCAGCAGCCGTCGTCCG
TTGCCGACGATGGATAACCTGCCTATCGAATCGCGGCTTTATTCTGACGGTCTGTTTAGCTTTTCCGTCAATGTGAACCG
GGCGACGCAAAACAGCAGCGATCAGATGCTGCGCACCGGGCGCCGAACGGTTTATAGCAGCGTTCGCGACAACGCGGAAA
TCACCATTGTCGGAGAGCTTCCGCCGCAAACGGCGAAGCGCATTGCCGACAGTATCAAATTCAGGGCAGTACAATGA

Upstream 100 bases:

>100_bases
GCCGACTGCACTCCGAACAGCTTCAGTTTGAGCAGGCGCAAACCCAGCAAGCCGCGGTACAGGTGCCAGGAATCCAAACT
TTAGGAACGCAATCGCAGTA

Downstream 100 bases:

>100_bases
TTAAAGAGTGGGCAACCGTTATCTCCTGGCAGAATGGTCAGGCGGTGGTGAGCTGCGACGTTAAAGCGTCATGCAGCAGC
TGCGCCTCCCGTGCGGGATG

Product: periplasmic negative regulator of sigmaE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYELSFVSITKQGVESLRYRHARLDSRPLAQLLQLDGPR
REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKTKFNWNPSWVPQGFSEVSSSRRP
LPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ

Sequences:

>Translated_318_residues
MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYELSFVSITKQGVESLRYRHARLDSRPLAQLLQLDGPR
REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKTKFNWNPSWVPQGFSEVSSSRRP
LPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ
>Mature_318_residues
MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYELSFVSITKQGVESLRYRHARLDSRPLAQLLQLDGPR
REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKTKFNWNPSWVPQGFSEVSSSRRP
LPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ

Specific function: Seems to modulate the activity of rpoE (sigma-E) [H]

COG id: COG3026

COG function: function code T; Negative regulator of sigma E activity

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseB family [H]

Homologues:

Organism=Escherichia coli, GI1788924, Length=318, Percent_Identity=88.9937106918239, Blast_Score=589, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005588 [H]

Pfam domain/function: PF03888 MucB_RseB [H]

EC number: NA

Molecular weight: Translated: 35840; Mature: 35840

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYELSFVSITKQGVESLRY
CCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
RHARLDSRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK
HHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEECCCCCEEEECCCHHHHHHHHHHHHHHH
RLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDMDTKLPMRVDLLDRDGETL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEECCCCHHH
EQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKTKFNWNPSWVPQGFSEVSSSRRP
HHHEEEEEEECHHHHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCCCCCHHHHHHCCCC
LPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGEL
CCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
PPQTAKRIADSIKFRAVQ
CHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYELSFVSITKQGVESLRY
CCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
RHARLDSRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK
HHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEECCCCCEEEECCCHHHHHHHHHHHHHHH
RLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDMDTKLPMRVDLLDRDGETL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEECCCCHHH
EQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKTKFNWNPSWVPQGFSEVSSSRRP
HHHEEEEEEECHHHHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCCCCCHHHHHHCCCC
LPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGEL
CCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
PPQTAKRIADSIKFRAVQ
CHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]