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The map label for this gene is staC [H]

Identifier: 29140729

GI number: 29140729

Start: 213239

End: 215830

Strand: Reverse

Name: staC [H]

Synonym: t0188

Alternate gene names: 29140729

Gene position: 215830-213239 (Counterclockwise)

Preceding gene: 29140730

Following gene: 29140728

Centisome position: 4.5

GC content: 51.31

Gene sequence:

>2592_bases
ATGCTCGCAGTTTGCTGTGCGCTATTTTATAGCCAGAGCAGTATTTCCGCTGAAAGCGTTGAATACGACAGTTCCTTTTT
AATGGGGAGTAGCGCCTCCACAATCGATATCAGCAAATACTCCGACGGCAACCCAACGCCTGTCGGAACGTATAGCGTGA
AAGTTTTTGTCAACGAAAACCCCGTATCAAGCCTGTCCATACCCTTTATCGATATCGGCAAGGTCAGTGCAGAAGCCTGC
CTGACACAAAAAAATCTGGCGCAGTTGCATATCAAACAGCCAGAAATCAATGCGACCAATCAAATTCTGAAAAAAGGGGA
GGAAGAAGATCAAGATTGTCTGAACCTTCCCGTCGCCATCGCGCATTCAGAGGTCAATTTTGATATGGGCGAACAGCGTC
TGGATATTACCGTACCTCAGGCGTGGCTCATTGAAGGTTATGACGGCTATGTTGAGCCTTCGCTGTGGGAAGATGGTATT
CCGGCAGCGCTTCTGTCCTACTCGGCTAACGGCTATCACAGCACCAATGGCAGCGCCGATAATGACAGTATGTATGCGGC
GTTTAACACCGGTATTAACCTCGGCGCATGGCGTTTTCGCGCCAACGGCAACTATAACTGGACGAAAGACTCAGGAAGCT
CCTTTGACTATCAGAATCGCTACTTGCAGCGCGATCTGCCTTCAATGCGCTCTCAACTTGTTGTCGGTGAAACCTATACC
ACGGGCGAAACATTTGACTCCGTAAGCATTCGCGGGGCTCGTCTGTATAGCGACAACCGAATGCTACCTTCGCAGCTTGC
CAACTATGCGCCGATTATTCGCGGCGTAGCAAACAGTAACGCCAAGGTCAGCATAACCCAGGGCGGCTACAAAATTTATG
AGTCCACGGTACCGCCAGGCCCCTTTGAAATCAGCGACATCAGTCCTTCCGGCTACGGTAGCGACCTCATCGTCACCGTT
GAGGAGGCCGACGGCAGTAAACGCACCTTTAGCCAGCCATTCTCCTCGGTTATGCAGATGCAGCGCCCGGGCGTCGGACG
TTGGGATTTCAGCGCCGGTGAAGTGAATGACGATGAGCTTCATGACAAGCCCTATATGGCGCAAGGTTCATATTACTACG
GCCTTAATAACTTTTTGACCCTCTATACAGGTGTTCAGGGAACAGATAATAACTATCTTGCCGGGTTGCTGGGTGTCGGC
CTCAACACCCCTCTTGGCGCATTTGCACTTGATGTCACTCAGTCTCGTACAGAGATCCCTGAGGATAAAACCTATAAGGG
CCAGAGCTACCGACTGACGTGGAACAAGCTGATTGAACCGACGGCAACCTCCTTTAACGTAGCGGCATATCGTTATTCAA
CGCAGGACTACCTGGGCCTGAATGATGCGCTACAGCTGATTGATGACGCGAAACATAAAGACGCGGACGATCGCAACACC
ATGCTTAACTATTCGCGCATGAAAAACCAGGTCACGGTCAGCATAAACCAACCGTTGAGGTTTAAGGAAGTCGACTACGG
TTCCTTTTTCCTCTCAGGCTCCTGGACCGACTACTGGGCTACCAATGAAAGCCGTACCGACTATAGCCTCGGTTACGGAA
GAGGTTTTTCGTGGGGCAGCCTCAGTATCAACCTCCAGAGATCCTGGGATGAAGATGGCGAAAAAGATGATTCGCTCTAT
ATCAACTTCAACGTTCCGCTGGAGAATCTGCTGGGCGGCGGTCGCCGTAAGTCGGGTTTCAGCTCACTGACGGCGCAAAT
GCGCACTGATTTTGACGGCGGGTACCAGTTGAGCATGAACAGCAACGGCAGCAGTGAAGACCACACGCTGAACTACAGCG
TTAACACCGGCTACACCATGCAGAAAAATGAAAAGAACATCACCGATGTCAGCGGCTACGCCAGCTATCAGTCCCCCTGG
GGAGATGTTACTGCTTCAGCCTCTGCCAATAATGACAGCAGCCGACAATATTCGCTCGCCACAACCGGAGACTTTGTCCT
GCATGGCGGTGGAGTGACGTTCACTAACGATAACTTCGGTAATAGCGATGCCATCGTGCTGGTAAAAGCCCCTGGCGCGA
AAGGCGCGCGCATCAATGGCGGCAACAGCACCATCGATCGCTGGGGCTACGGCGCGACGAACTCGCTTTCCGCCTACAGA
GAAAACCAGGTCAATATTGATATCGACACGCTGGAAAACGATGTCGAACTAAAGAGCACCAGTACAACCCTGATACCGCG
TGATGGCGCGGTAGTCTTAGCCAGTTTCGAAACTGACCAGGGACGCTCGGTCATTCTCAACATGTCCCGTAATGACGGAA
AAGCCCTACCATTTGGCGCAGAAGTCTACGAGAACGATGTGCAGATCGACAACATGGGCCAGGGCGGTCAGGCTTTTGTT
CGCGGCATCAGCGATGCAGGCGAACTCTCAGTACGCTGGTTTGAAGAAAACCAGCCAGCAACTTGTTTAGCAACCTTTGC
GTTGCCGGCAACGCAACAAACGGTAGGGTCCAGCCAGACCTTACTGTTAGACCACATAACCTGTCGTGTTAATAACCTTA
AATCAAATGGAATAGACAATGAAAAGGAATAA

Upstream 100 bases:

>100_bases
TGATTGAAGGTTCCGTATCGCTGTAACGGATTAACCAAGAATCAGGATGAAGAAATCGGTGTAAAACTTTCCACATTCCA
AGGCCATGCCGAAGAAAACG

Downstream 100 bases:

>100_bases
ATACCTTTTAGCAGCCTCTGTGCTCGCCGTGATATTTCCGCTTACCAGTCAGGCGGAAAATATCAACGTCGACTTTACCG
CCACCGTGTTAGCCACGACC

Product: outer membrane usher protein

Products: NA

Alternate protein names: Heat shock protein E [H]

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISKYSDGNPTPVGTYSVKVFVNENPVSSLSIPFIDIGKVSAEAC
LTQKNLAQLHIKQPEINATNQILKKGEEEDQDCLNLPVAIAHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSLWEDGI
PAALLSYSANGYHSTNGSADNDSMYAAFNTGINLGAWRFRANGNYNWTKDSGSSFDYQNRYLQRDLPSMRSQLVVGETYT
TGETFDSVSIRGARLYSDNRMLPSQLANYAPIIRGVANSNAKVSITQGGYKIYESTVPPGPFEISDISPSGYGSDLIVTV
EEADGSKRTFSQPFSSVMQMQRPGVGRWDFSAGEVNDDELHDKPYMAQGSYYYGLNNFLTLYTGVQGTDNNYLAGLLGVG
LNTPLGAFALDVTQSRTEIPEDKTYKGQSYRLTWNKLIEPTATSFNVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNT
MLNYSRMKNQVTVSINQPLRFKEVDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGSLSINLQRSWDEDGEKDDSLY
INFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMNSNGSSEDHTLNYSVNTGYTMQKNEKNITDVSGYASYQSPW
GDVTASASANNDSSRQYSLATTGDFVLHGGGVTFTNDNFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYR
ENQVNIDIDTLENDVELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGAEVYENDVQIDNMGQGGQAFV
RGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQTLLLDHITCRVNNLKSNGIDNEKE

Sequences:

>Translated_863_residues
MLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISKYSDGNPTPVGTYSVKVFVNENPVSSLSIPFIDIGKVSAEAC
LTQKNLAQLHIKQPEINATNQILKKGEEEDQDCLNLPVAIAHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSLWEDGI
PAALLSYSANGYHSTNGSADNDSMYAAFNTGINLGAWRFRANGNYNWTKDSGSSFDYQNRYLQRDLPSMRSQLVVGETYT
TGETFDSVSIRGARLYSDNRMLPSQLANYAPIIRGVANSNAKVSITQGGYKIYESTVPPGPFEISDISPSGYGSDLIVTV
EEADGSKRTFSQPFSSVMQMQRPGVGRWDFSAGEVNDDELHDKPYMAQGSYYYGLNNFLTLYTGVQGTDNNYLAGLLGVG
LNTPLGAFALDVTQSRTEIPEDKTYKGQSYRLTWNKLIEPTATSFNVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNT
MLNYSRMKNQVTVSINQPLRFKEVDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGSLSINLQRSWDEDGEKDDSLY
INFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMNSNGSSEDHTLNYSVNTGYTMQKNEKNITDVSGYASYQSPW
GDVTASASANNDSSRQYSLATTGDFVLHGGGVTFTNDNFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYR
ENQVNIDIDTLENDVELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGAEVYENDVQIDNMGQGGQAFV
RGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQTLLLDHITCRVNNLKSNGIDNEKE
>Mature_863_residues
MLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISKYSDGNPTPVGTYSVKVFVNENPVSSLSIPFIDIGKVSAEAC
LTQKNLAQLHIKQPEINATNQILKKGEEEDQDCLNLPVAIAHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSLWEDGI
PAALLSYSANGYHSTNGSADNDSMYAAFNTGINLGAWRFRANGNYNWTKDSGSSFDYQNRYLQRDLPSMRSQLVVGETYT
TGETFDSVSIRGARLYSDNRMLPSQLANYAPIIRGVANSNAKVSITQGGYKIYESTVPPGPFEISDISPSGYGSDLIVTV
EEADGSKRTFSQPFSSVMQMQRPGVGRWDFSAGEVNDDELHDKPYMAQGSYYYGLNNFLTLYTGVQGTDNNYLAGLLGVG
LNTPLGAFALDVTQSRTEIPEDKTYKGQSYRLTWNKLIEPTATSFNVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNT
MLNYSRMKNQVTVSINQPLRFKEVDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGSLSINLQRSWDEDGEKDDSLY
INFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMNSNGSSEDHTLNYSVNTGYTMQKNEKNITDVSGYASYQSPW
GDVTASASANNDSSRQYSLATTGDFVLHGGGVTFTNDNFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYR
ENQVNIDIDTLENDVELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGAEVYENDVQIDNMGQGGQAFV
RGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQTLLLDHITCRVNNLKSNGIDNEKE

Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=60.4460093896714, Blast_Score=1094, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=881, Percent_Identity=32.9171396140749, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI1789533, Length=843, Percent_Identity=34.638196915777, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI1786744, Length=874, Percent_Identity=31.0068649885584, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1788427, Length=843, Percent_Identity=32.0284697508897, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1787172, Length=871, Percent_Identity=32.0321469575201, Blast_Score=384, Evalue=1e-107,
Organism=Escherichia coli, GI87081778, Length=832, Percent_Identity=26.4423076923077, Blast_Score=236, Evalue=5e-63,
Organism=Escherichia coli, GI1789610, Length=747, Percent_Identity=25.9705488621151, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94619; Mature: 94619

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISKYSDGNPTPVGTYSVKVFVNEN
CHHEEEEHHHCCCCCCCCCEECCCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
PVSSLSIPFIDIGKVSAEACLTQKNLAQLHIKQPEINATNQILKKGEEEDQDCLNLPVAI
CCCEEECCEEECCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHCCCEEE
AHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSLWEDGIPAALLSYSANGYHSTNGSAD
EEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCC
NDSMYAAFNTGINLGAWRFRANGNYNWTKDSGSSFDYQNRYLQRDLPSMRSQLVVGETYT
CCCEEEEEECCCEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEE
TGETFDSVSIRGARLYSDNRMLPSQLANYAPIIRGVANSNAKVSITQGGYKIYESTVPPG
CCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC
PFEISDISPSGYGSDLIVTVEEADGSKRTFSQPFSSVMQMQRPGVGRWDFSAGEVNDDEL
CEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHC
HDKPYMAQGSYYYGLNNFLTLYTGVQGTDNNYLAGLLGVGLNTPLGAFALDVTQSRTEIP
CCCCEEECCCEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHCCC
EDKTYKGQSYRLTWNKLIEPTATSFNVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNT
CCCCCCCCEEEEEHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
MLNYSRMKNQVTVSINQPLRFKEVDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGS
HEEHHHCCCEEEEEECCCEEEEECCCCEEEEECCCCEEECCCCCCCCEECCCCCCCCCCE
LSINLQRSWDEDGEKDDSLYINFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMN
EEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEC
SNGSSEDHTLNYSVNTGYTMQKNEKNITDVSGYASYQSPWGDVTASASANNDSSRQYSLA
CCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE
TTGDFVLHGGGVTFTNDNFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYR
ECCCEEEECCCEEECCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCHHHH
ENQVNIDIDTLENDVELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGA
CCCEEEEEECCCCCEEEECCCEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCH
EVYENDVQIDNMGQGGQAFVRGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQT
HHHCCCEEEECCCCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHCCCCCE
LLLDHITCRVNNLKSNGIDNEKE
EEEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISKYSDGNPTPVGTYSVKVFVNEN
CHHEEEEHHHCCCCCCCCCEECCCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
PVSSLSIPFIDIGKVSAEACLTQKNLAQLHIKQPEINATNQILKKGEEEDQDCLNLPVAI
CCCEEECCEEECCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHCCCEEE
AHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSLWEDGIPAALLSYSANGYHSTNGSAD
EEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCC
NDSMYAAFNTGINLGAWRFRANGNYNWTKDSGSSFDYQNRYLQRDLPSMRSQLVVGETYT
CCCEEEEEECCCEECEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEE
TGETFDSVSIRGARLYSDNRMLPSQLANYAPIIRGVANSNAKVSITQGGYKIYESTVPPG
CCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC
PFEISDISPSGYGSDLIVTVEEADGSKRTFSQPFSSVMQMQRPGVGRWDFSAGEVNDDEL
CEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHC
HDKPYMAQGSYYYGLNNFLTLYTGVQGTDNNYLAGLLGVGLNTPLGAFALDVTQSRTEIP
CCCCEEECCCEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHCCC
EDKTYKGQSYRLTWNKLIEPTATSFNVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNT
CCCCCCCCEEEEEHHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
MLNYSRMKNQVTVSINQPLRFKEVDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGS
HEEHHHCCCEEEEEECCCEEEEECCCCEEEEECCCCEEECCCCCCCCEECCCCCCCCCCE
LSINLQRSWDEDGEKDDSLYINFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMN
EEEEEEECCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEC
SNGSSEDHTLNYSVNTGYTMQKNEKNITDVSGYASYQSPWGDVTASASANNDSSRQYSLA
CCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE
TTGDFVLHGGGVTFTNDNFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYR
ECCCEEEECCCEEECCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCHHHH
ENQVNIDIDTLENDVELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGA
CCCEEEEEECCCCCEEEECCCEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCH
EVYENDVQIDNMGQGGQAFVRGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQT
HHHCCCEEEECCCCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHCCCCCE
LLLDHITCRVNNLKSNGIDNEKE
EEEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]