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The map label for this gene is staD [H]

Identifier: 29140728

GI number: 29140728

Start: 212686

End: 213252

Strand: Reverse

Name: staD [H]

Synonym: t0187

Alternate gene names: 29140728

Gene position: 213252-212686 (Counterclockwise)

Preceding gene: 29140729

Following gene: 29140727

Centisome position: 4.45

GC content: 50.97

Gene sequence:

>567_bases
ATGAAAAGGAATAAATACCTTTTAGCAGCCTCTGTGCTCGCCGTGATATTTCCGCTTACCAGTCAGGCGGAAAATATCAA
CGTCGACTTTACCGCCACCGTGTTAGCCACGACCTGCAGCATGTCAATTGCGGCGTTAGATGGCTCGAACTTATCGGGTG
ATGCCACCAGCGGCTATACGCTGAACGTCGGCGATGTCGGGTTGGATAAAATTATAAAAAAATCAGCGGAATCGCAGAAA
AACTTTAAGTTTGTCGCGAAGGATTGCAGTGCCGCTCTGACCAAAATCACCACCACGCTTGCCAGCTCCACAGATGCCAG
CGGCAATTTTATCAAAAACCAATCAGCGGCAAGCGGCGCTGCCACCAATGTTGGCATGGGCTTTAAGCGCAAAAGCACTA
CCGATGAAACCTATTTCACGCCCGGCTCAGGCTCATTTAGCTGGACTTCCGACGAGCGCGCAGCAAACGAAGTGGAAATG
ACGGTCGCGCTGCGTGAACTGACCGACGGCGCGGGTACCACAGGTGCTTTCAGCTCAACCGCTACGTTTAACTTCACTTA
TCAATAA

Upstream 100 bases:

>100_bases
GCGTTGCCGGCAACGCAACAAACGGTAGGGTCCAGCCAGACCTTACTGTTAGACCACATAACCTGTCGTGTTAATAACCT
TAAATCAAATGGAATAGACA

Downstream 100 bases:

>100_bases
CAAGGACGATGATAATGAAAAAGCAAATATTGCGCGTCGTGATTTTTAGCTCGCTGATTGCCACGGGAGCTGGCATATCA
ACGATGACATATGCCGATGG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIAALDGSNLSGDATSGYTLNVGDVGLDKIIKKSAESQK
NFKFVAKDCSAALTKITTTLASSTDASGNFIKNQSAASGAATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEM
TVALRELTDGAGTTGAFSSTATFNFTYQ

Sequences:

>Translated_188_residues
MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIAALDGSNLSGDATSGYTLNVGDVGLDKIIKKSAESQK
NFKFVAKDCSAALTKITTTLASSTDASGNFIKNQSAASGAATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEM
TVALRELTDGAGTTGAFSSTATFNFTYQ
>Mature_188_residues
MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIAALDGSNLSGDATSGYTLNVGDVGLDKIIKKSAESQK
NFKFVAKDCSAALTKITTTLASSTDASGNFIKNQSAASGAATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEM
TVALRELTDGAGTTGAFSSTATFNFTYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081690, Length=170, Percent_Identity=45.8823529411765, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19660; Mature: 19660

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIAALDGSNLSGDATSGYT
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCEEEEEECCCCCCCCCCCCEE
LNVGDVGLDKIIKKSAESQKNFKFVAKDCSAALTKITTTLASSTDASGNFIKNQSAASGA
EEECCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
ATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEMTVALRELTDGAGTTGAFSST
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHEEHHCCCCCCCCCCCCC
ATFNFTYQ
EEEEEEEC
>Mature Secondary Structure
MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIAALDGSNLSGDATSGYT
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCEEEEEECCCCCCCCCCCCEE
LNVGDVGLDKIIKKSAESQKNFKFVAKDCSAALTKITTTLASSTDASGNFIKNQSAASGA
EEECCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
ATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEMTVALRELTDGAGTTGAFSST
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHEEHHCCCCCCCCCCCCC
ATFNFTYQ
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]