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The map label for this gene is ycaN [H]

Identifier: 29140684

GI number: 29140684

Start: 164463

End: 165404

Strand: Direct

Name: ycaN [H]

Synonym: t0143

Alternate gene names: 29140684

Gene position: 164463-165404 (Clockwise)

Preceding gene: 29140682

Following gene: 29140688

Centisome position: 3.43

GC content: 51.7

Gene sequence:

>942_bases
ATGAAGGCTGGCTTAATAATGCGTCATGATGTGATGTCCGTATTGCATGCTTTTTGCATGATTGCTGAAAACCATAGCTT
CACGCGGGCAGCGGCGCAGTTACATATTTCCACGTCGGCGTTAAGTCAGAATATGCGTCAACTGGAGGATGAACTTGGCG
TGAAATTATTGAACCGAACCACCCGGCGTGTCGGTTTGACAGAAGCAGGACATGCCTTTCTTGCCAGTATCAGACCCGCA
TTGAACCATATTGATGAGGCGATGGAACATGCCTGCCAGAGCCGCGATATACCCGGAGGGACATTACGCCTGACCGTACC
GCGCACGGCGGCCACGCTTCTGTTACAACCTAATCTCGCCGGCTTCATGCGCGATTATCCCGATATTCGGCTGGATATCG
ATGTGAATGACGGTTTTGTGGATTTAATTAACGAACGCTTTGATGCCGGTATTCGCTTTGGCGATGCGGTACAACTTGAT
ATGAATGTCGTTCCGCTCGGTGATGTTTTACGCCCGGCGATCGTAGCATCCCCTGCATACCTTGCGCGTTTTGGCACGCC
GCTGCATCCTCAGGAGCTCATCAATCACCGCTGCCTTTGCCATCGTTTTACGCGTGAGAGCGGGCTATATCGGTGGGAGT
TTGTTCATGGAGCGCAACGGCTGGAAATTACGCCGGAAGCCGCGTTAATGGTGAATGATAAAGCGTTGCGTCTCTCCGCC
GCGCGTGATGGGGCAGAGCTAACCTACGTTTTTGAACAGGATGTCCACGAAGACTTACAGGATGGGCGGTTGTGTTCCGT
ACTTGAGGAGTGGCTGCCTGCGGCGGACCGGTTTTATTTGTATTATCCCGGCCGCGCGCATATGGCGCCAAAACTACGCG
TATTTATTGATTATTTTTGTCATAAGGCGATATTGCCGTCTCAACAGAGCTATCACCGTTAG

Upstream 100 bases:

>100_bases
TGTACGATATTGCATACTGCCTCCATGAGGATATTTTGTGCATGGCAGGCAGTCTATACCTGGCGTATAAGATGAAAAAT
AGGGGGAATAAGCATGGTTT

Downstream 100 bases:

>100_bases
CGCTCTTCGCTCCAGTCGTCGCTATCAGACTGGTCGCCGCTGCTGGCGATTCGTTTCTCTTCGGCGGCCCATTCGCCCAA
ATCAATTAACTGACAGCGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFLASIRPA
LNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLD
MNVVPLGDVLRPAIVASPAYLARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSA
ARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKAILPSQQSYHR

Sequences:

>Translated_313_residues
MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFLASIRPA
LNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLD
MNVVPLGDVLRPAIVASPAYLARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSA
ARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKAILPSQQSYHR
>Mature_313_residues
MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFLASIRPA
LNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLD
MNVVPLGDVLRPAIVASPAYLARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSA
ARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKAILPSQQSYHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=37.248322147651, Blast_Score=214, Evalue=8e-57,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=35.3535353535354, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=29.3103448275862, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=30.8474576271186, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=30.2721088435374, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789440, Length=303, Percent_Identity=25.7425742574257, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=28.0701754385965, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=34.2105263157895, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=26.5993265993266, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=26.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=26.3333333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787879, Length=141, Percent_Identity=36.8794326241135, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693105, Length=198, Percent_Identity=28.7878787878788, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=214, Percent_Identity=28.0373831775701, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787806, Length=125, Percent_Identity=36, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790399, Length=117, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35397; Mature: 35397

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRT
CCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH
TRRVGLTEAGHAFLASIRPALNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCHH
GFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAY
HHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHCCCHH
LARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEEECCCCEEEEC
ARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFC
CCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHH
HKAILPSQQSYHR
HHHCCCCCHHCCC
>Mature Secondary Structure
MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRT
CCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH
TRRVGLTEAGHAFLASIRPALNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCHH
GFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAY
HHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHCCCHH
LARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEEECCCCEEEEC
ARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFC
CCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHH
HKAILPSQQSYHR
HHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]