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The map label for this gene is cshA3 [H]

Identifier: 28378917

GI number: 28378917

Start: 2113437

End: 2114717

Strand: Direct

Name: cshA3 [H]

Synonym: lp_2337

Alternate gene names: 28378917

Gene position: 2113437-2114717 (Clockwise)

Preceding gene: 28378913

Following gene: 28378918

Centisome position: 63.88

GC content: 49.26

Gene sequence:

>1281_bases
ATGCAACAACCATTAGCCTACCGGATGCGACCAAAAACGCTGAAAGACGTTGTCGGTCAGCAACAATTGGTCGGCCCAGG
CAAGATCATCGCCCGGATGGTCAAAGCCAAACGACTATCATCAATGATTCTATACGGCCCACCAGGTACTGGCAAGACTA
GTATCGCGAGCGCCATTGCCGGTTCCACCAAGTATGCTTTTCGAATGCTGAATGCAGCTACCGACAGTAAAAAACAACTT
CAAATCGTAGCCGAAGAAGCCAAAATGAGCGGGACGGTCATTCTTCTGCTGGATGAAATCCACCGGTTGGATAAAACTAA
ACAAGACTTTTTATTGCCTCACTTAGAAAGTGGCCGCATCATTTTGATTGGTGCTACGACCGAAAATCCATATATTAGCA
TTAATCCAGCCATCCGTAGTCGAACACAGATCTTTCAAGTTTTCCCGCTCACTGACGATGATATTCAGCACGCGGTGGAA
CGAGCCCTCGCTGACGAAAAAAACGGTCTTGGCAGTTACCACGTTGATTTAGCACCCGCGGCCATGCACCACCTGTGCAC
CGCTACCAACGGGGATTTGCGCAGTGCCCTCAATGGGTTAGAATTGGCCGTATTATCATCGTCTCCGGCCGATGACGGCA
CCATCGCCATTTCACAACAAACAATTGAAGAATGCTTGCAAAAGAAAGCCTTATCCGCAGATAAAGATGGTGACGCCCAC
TACGACGTGATCTCGGCCTTTCAAAAGTCCATACGCGGTTCCGACGTAAACGCTGCATTACACTACTTAGCCCGGCTAGT
TGAGGCGGGGGATTTAAAGAGTATTATGCGTCGGCTGATGGTGATTGCCTATGAGGATATTGGATTAGCTAATCCAGCCG
CGTGTGCCCACACCGTCGCAGCTGTTCAAGCTGCCGATCAATTGGGATTTCCTGAAGCACGGATTCCGCTAGCTGACGCT
GTGATTGAATTAGCCTTATCGCCAAAGTCAAATTCAGGGATCAGTGCCATTGATGCCGCGCTCACAACGGTCCGTGACGG
CCATTTCGGTGATATCCCGGCCGACATCAAGGATGCGCATTATCAAGGCGCTGCCAAACTCGGTCATGGTGTTGGATACG
ATTTTCCACACGATCACCCGGGTGATTGGGTCGCTCAACAGTATTTACCAGATGCCATCAAATCAGCCAAGTATTACGAG
CCCAAAACAAATGGCCGCTACGAAACAGCCCTTGCGCAACAATACGAAAAATTATTAAAGGCTAACGAGAGAAATCGCTA
A

Upstream 100 bases:

>100_bases
TCCTTTATAATTATTTTGTTCGTTAAACTGATTATTCGGTGTCCTTCATTGTAAATGCTATAATAGTTGGGACTAGTTTT
GCAAGGAGGGATTTCAAACG

Downstream 100 bases:

>100_bases
CAATACCTTGGTTGTGCTAATAATTGCAACTTTTATTTTTATATGCTAGACTAAGAGTCGAAATTACTAAGGTGTGCGCA
TTGCTCTAAACAAAGTGTTG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MQQPLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAKRLSSMILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIILIGATTENPYISINPAIRSRTQIFQVFPLTDDDIQHAVE
RALADEKNGLGSYHVDLAPAAMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQKKALSADKDGDAH
YDVISAFQKSIRGSDVNAALHYLARLVEAGDLKSIMRRLMVIAYEDIGLANPAACAHTVAAVQAADQLGFPEARIPLADA
VIELALSPKSNSGISAIDAALTTVRDGHFGDIPADIKDAHYQGAAKLGHGVGYDFPHDHPGDWVAQQYLPDAIKSAKYYE
PKTNGRYETALAQQYEKLLKANERNR

Sequences:

>Translated_426_residues
MQQPLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAKRLSSMILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIILIGATTENPYISINPAIRSRTQIFQVFPLTDDDIQHAVE
RALADEKNGLGSYHVDLAPAAMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQKKALSADKDGDAH
YDVISAFQKSIRGSDVNAALHYLARLVEAGDLKSIMRRLMVIAYEDIGLANPAACAHTVAAVQAADQLGFPEARIPLADA
VIELALSPKSNSGISAIDAALTTVRDGHFGDIPADIKDAHYQGAAKLGHGVGYDFPHDHPGDWVAQQYLPDAIKSAKYYE
PKTNGRYETALAQQYEKLLKANERNR
>Mature_426_residues
MQQPLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAKRLSSMILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIILIGATTENPYISINPAIRSRTQIFQVFPLTDDDIQHAVE
RALADEKNGLGSYHVDLAPAAMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQKKALSADKDGDAH
YDVISAFQKSIRGSDVNAALHYLARLVEAGDLKSIMRRLMVIAYEDIGLANPAACAHTVAAVQAADQLGFPEARIPLADA
VIELALSPKSNSGISAIDAALTTVRDGHFGDIPADIKDAHYQGAAKLGHGVGYDFPHDHPGDWVAQQYLPDAIKSAKYYE
PKTNGRYETALAQQYEKLLKANERNR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=34.841628959276, Blast_Score=239, Evalue=3e-63,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=31.2217194570136, Blast_Score=192, Evalue=6e-49,
Organism=Homo sapiens, GI6677723, Length=341, Percent_Identity=24.633431085044, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI194306571, Length=340, Percent_Identity=24.4117647058824, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI194306567, Length=340, Percent_Identity=24.4117647058824, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787119, Length=409, Percent_Identity=36.4303178484108, Blast_Score=269, Evalue=3e-73,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=33.175355450237, Blast_Score=217, Evalue=3e-57,
Organism=Saccharomyces cerevisiae, GI6324039, Length=261, Percent_Identity=27.5862068965517, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19921076, Length=300, Percent_Identity=25, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46138; Mature: 46138

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAKRLSSMILYGPPGTGKTSIASAIA
CCCCCCCCCCCHHHHHHHCHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHCCCCCCCCCE
ILIGATTENPYISINPAIRSRTQIFQVFPLTDDDIQHAVERALADEKNGLGSYHVDLAPA
EEEEECCCCCEEEECHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHH
AMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQKKALSADKDGDAH
HHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCH
YDVISAFQKSIRGSDVNAALHYLARLVEAGDLKSIMRRLMVIAYEDIGLANPAACAHTVA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AVQAADQLGFPEARIPLADAVIELALSPKSNSGISAIDAALTTVRDGHFGDIPADIKDAH
HHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
YQGAAKLGHGVGYDFPHDHPGDWVAQQYLPDAIKSAKYYEPKTNGRYETALAQQYEKLLK
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
ANERNR
HCCCCC
>Mature Secondary Structure
MQQPLAYRMRPKTLKDVVGQQQLVGPGKIIARMVKAKRLSSMILYGPPGTGKTSIASAIA
CCCCCCCCCCCHHHHHHHCHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRI
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHCCCCCCCCCE
ILIGATTENPYISINPAIRSRTQIFQVFPLTDDDIQHAVERALADEKNGLGSYHVDLAPA
EEEEECCCCCEEEECHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHH
AMHHLCTATNGDLRSALNGLELAVLSSSPADDGTIAISQQTIEECLQKKALSADKDGDAH
HHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCH
YDVISAFQKSIRGSDVNAALHYLARLVEAGDLKSIMRRLMVIAYEDIGLANPAACAHTVA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AVQAADQLGFPEARIPLADAVIELALSPKSNSGISAIDAALTTVRDGHFGDIPADIKDAH
HHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
YQGAAKLGHGVGYDFPHDHPGDWVAQQYLPDAIKSAKYYEPKTNGRYETALAQQYEKLLK
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
ANERNR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]