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The map label for this gene is xerC [H]

Identifier: 28378636

GI number: 28378636

Start: 1805861

End: 1806184

Strand: Direct

Name: xerC [H]

Synonym: lp_1997

Alternate gene names: 28378636

Gene position: 1805861-1806184 (Clockwise)

Preceding gene: 28378635

Following gene: 28378637

Centisome position: 54.59

GC content: 36.11

Gene sequence:

>324_bases
CTGGAAGAAAGTATAAAATGTGAAGATCAATTTGACAGCCCATTTATTTGCACTAAGCAAAACGGTAAACCGATCACGCC
TAGTGTTATTAAATACTATACAGGCAAACTATCACGGGAATTAGACTTTTCATTTAATTTCCACTCATTACGGCACACAC
ACGCAACGATGCTATTAGAAAATGGAGCCAAGTACAAAGAGATACAACAACGCCTTGGTCACTCACGTATTTCAACAACG
CTAGATATCTATTCCCACGTAACCAATAAGATGAAACGTGATACTGTTGATATCTTCGAAAATATGTTAAAAAACAACAG
TTAA

Upstream 100 bases:

>100_bases
CAGCAATCATCGTTATTACGCGGTTGGAACTATTCCCTATCGCAAAAATTACAAACTTTATTCTGTTGGCAGCGAAGTTC
CTCATTTTTGACATTAACAC

Downstream 100 bases:

>100_bases
AAAGATGATAGACACTTTTTCGATATATGTATATTTTGCCAACATCACAGTTTCAATGTTGGCAAAACAGAAAAATAAAA
GAGCTCCGCTTACGCGGAAC

Product: integrase, fragment

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MEESIKCEDQFDSPFICTKQNGKPITPSVIKYYTGKLSRELDFSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTT
LDIYSHVTNKMKRDTVDIFENMLKNNS

Sequences:

>Translated_107_residues
MEESIKCEDQFDSPFICTKQNGKPITPSVIKYYTGKLSRELDFSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTT
LDIYSHVTNKMKRDTVDIFENMLKNNS
>Mature_107_residues
MEESIKCEDQFDSPFICTKQNGKPITPSVIKYYTGKLSRELDFSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTT
LDIYSHVTNKMKRDTVDIFENMLKNNS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 12489; Mature: 12489

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEESIKCEDQFDSPFICTKQNGKPITPSVIKYYTGKLSRELDFSFNFHSLRHTHATMLLE
CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
NGAKYKEIQQRLGHSRISTTLDIYSHVTNKMKRDTVDIFENMLKNNS
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEESIKCEDQFDSPFICTKQNGKPITPSVIKYYTGKLSRELDFSFNFHSLRHTHATMLLE
CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
NGAKYKEIQQRLGHSRISTTLDIYSHVTNKMKRDTVDIFENMLKNNS
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA