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The map label for this gene is swrAB [H]

Identifier: 28377602

GI number: 28377602

Start: 679341

End: 680516

Strand: Direct

Name: swrAB [H]

Synonym: lp_0742

Alternate gene names: 28377602

Gene position: 679341-680516 (Clockwise)

Preceding gene: 28377601

Following gene: 28377603

Centisome position: 20.53

GC content: 47.45

Gene sequence:

>1176_bases
ATGCAGGTATTAAAGATTTTTGAATTGTTTCTTTTACAACCGCTAGTTTGGTTAGGATTGCTGCGTAGTTATTTAACCGC
TAAACGGCGGGTGAAGAGTGAACGGCAGCATTTTCAGAGTGCTATCAACCCACAATTAGTTGAAGTCCACCACTTTTTAG
TGGATGGCTGTTTACTAGGAGTTCTAATGACAATTATTAGCTTGGCATTGGGACTAGTGGTGGCCCCCATCTGGGTGGTT
ATATACGAAGTAGTGGCGGCCATTAGCTTGATCATTATTCCTGGTGCACTGGTACCAGTGACCGCTTTTGGCCTCAGCTG
GTTAGTTTATTGGATTATGAGCCCGGAATTAACGACGGTGGGGGGCGCTTTACAACGGCACGGTGTTGCCATGACCAGTA
TGAGTGGCAATTTGGTGGTGAACGGACTATTGTTATTAGCCATCGTGCTGGCGGCTACGGCGGTCTTGTTACGACACTAT
GATTATGAGGGCCGTTCACCGCAACTACAGCCCGACCAACGTGGAAAGCGACTTGTTCGTTACCAGTGGCAACAATTGTT
GGTCTTACCAGTTGGGGTACTGGTCCCCGGTGATTGGTTACACGCAACTATCAGTTGGTGGCCTGTGTTTATGGTTGGCG
AGCGCTCCTTCAGCATTTTATTGTTGCCTTTATTAGTTGGGACGAGTGTTCGCGTTTATAAGCAGCTGCCACAAATTGCA
TGGCGGCAGTTAGCGGCCCGCTATGGTTGGGTAACACTCGCGAGTGTTTTGGTTGCAATCATTGCCCGTTTTGCAGTGCT
CAGCCCGCAGTGGTTGCTAGCATTGATGGGATTAATCGTTGTGCTAACTTGGGGAATCTTAGCACAGCACCGTTATCATG
ATCGACACCAACAGTTTCGATATTCTGATACTGAACAAGGTGTGCGGGTGATTGGGTTACGCCCCCACACGCCCGCGGAT
AAATTAAATCTCGATTTAGGAGATATTATCTTGGAATGTAACCGGCAACCAGTTAATACGGAAGCTGAATTTTACGCGGC
CCTACTGAAAAGTCCGACGTATGTTCACCTCAAAGTGCGCAATCGGCAACAGGAATTAATTATTACCGAAACGGCGATCT
ATAATGGCGCCCCACACGAGTTAGGAATTGTGTTATTCACTGATCAGGAGGATTAA

Upstream 100 bases:

>100_bases
TAAAGCGGTAATAGCAGGACTGACGGAATTGAAACGGCGTTGGTCTCCTTGGGCAAAAATGCTATACTAACTTCAGAGTT
TAACGTTAGGGGTCACGCAC

Downstream 100 bases:

>100_bases
TGACCATGGATAAGATTTTAGTGGTAGACGACGAACCAGCTATCGTCACGTTATTATCATATAACTTGAAGCAGGCGGGG
TACGAAGTTGTGACGGCGAC

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQVLKIFELFLLQPLVWLGLLRSYLTAKRRVKSERQHFQSAINPQLVEVHHFLVDGCLLGVLMTIISLALGLVVAPIWVV
IYEVVAAISLIIIPGALVPVTAFGLSWLVYWIMSPELTTVGGALQRHGVAMTSMSGNLVVNGLLLLAIVLAATAVLLRHY
DYEGRSPQLQPDQRGKRLVRYQWQQLLVLPVGVLVPGDWLHATISWWPVFMVGERSFSILLLPLLVGTSVRVYKQLPQIA
WRQLAARYGWVTLASVLVAIIARFAVLSPQWLLALMGLIVVLTWGILAQHRYHDRHQQFRYSDTEQGVRVIGLRPHTPAD
KLNLDLGDIILECNRQPVNTEAEFYAALLKSPTYVHLKVRNRQQELIITETAIYNGAPHELGIVLFTDQED

Sequences:

>Translated_391_residues
MQVLKIFELFLLQPLVWLGLLRSYLTAKRRVKSERQHFQSAINPQLVEVHHFLVDGCLLGVLMTIISLALGLVVAPIWVV
IYEVVAAISLIIIPGALVPVTAFGLSWLVYWIMSPELTTVGGALQRHGVAMTSMSGNLVVNGLLLLAIVLAATAVLLRHY
DYEGRSPQLQPDQRGKRLVRYQWQQLLVLPVGVLVPGDWLHATISWWPVFMVGERSFSILLLPLLVGTSVRVYKQLPQIA
WRQLAARYGWVTLASVLVAIIARFAVLSPQWLLALMGLIVVLTWGILAQHRYHDRHQQFRYSDTEQGVRVIGLRPHTPAD
KLNLDLGDIILECNRQPVNTEAEFYAALLKSPTYVHLKVRNRQQELIITETAIYNGAPHELGIVLFTDQED
>Mature_391_residues
MQVLKIFELFLLQPLVWLGLLRSYLTAKRRVKSERQHFQSAINPQLVEVHHFLVDGCLLGVLMTIISLALGLVVAPIWVV
IYEVVAAISLIIIPGALVPVTAFGLSWLVYWIMSPELTTVGGALQRHGVAMTSMSGNLVVNGLLLLAIVLAATAVLLRHY
DYEGRSPQLQPDQRGKRLVRYQWQQLLVLPVGVLVPGDWLHATISWWPVFMVGERSFSILLLPLLVGTSVRVYKQLPQIA
WRQLAARYGWVTLASVLVAIIARFAVLSPQWLLALMGLIVVLTWGILAQHRYHDRHQQFRYSDTEQGVRVIGLRPHTPAD
KLNLDLGDIILECNRQPVNTEAEFYAALLKSPTYVHLKVRNRQQELIITETAIYNGAPHELGIVLFTDQED

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44023; Mature: 44023

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00276 CHANNEL_COLICIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLKIFELFLLQPLVWLGLLRSYLTAKRRVKSERQHFQSAINPQLVEVHHFLVDGCLLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VLMTIISLALGLVVAPIWVVIYEVVAAISLIIIPGALVPVTAFGLSWLVYWIMSPELTTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHH
GGALQRHGVAMTSMSGNLVVNGLLLLAIVLAATAVLLRHYDYEGRSPQLQPDQRGKRLVR
HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
YQWQQLLVLPVGVLVPGDWLHATISWWPVFMVGERSFSILLLPLLVGTSVRVYKQLPQIA
HHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHH
WRQLAARYGWVTLASVLVAIIARFAVLSPQWLLALMGLIVVLTWGILAQHRYHDRHQQFR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSDTEQGVRVIGLRPHTPADKLNLDLGDIILECNRQPVNTEAEFYAALLKSPTYVHLKVR
CCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEE
NRQQELIITETAIYNGAPHELGIVLFTDQED
CCCCCEEEEEHHHCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MQVLKIFELFLLQPLVWLGLLRSYLTAKRRVKSERQHFQSAINPQLVEVHHFLVDGCLLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VLMTIISLALGLVVAPIWVVIYEVVAAISLIIIPGALVPVTAFGLSWLVYWIMSPELTTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHH
GGALQRHGVAMTSMSGNLVVNGLLLLAIVLAATAVLLRHYDYEGRSPQLQPDQRGKRLVR
HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
YQWQQLLVLPVGVLVPGDWLHATISWWPVFMVGERSFSILLLPLLVGTSVRVYKQLPQIA
HHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHH
WRQLAARYGWVTLASVLVAIIARFAVLSPQWLLALMGLIVVLTWGILAQHRYHDRHQQFR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSDTEQGVRVIGLRPHTPADKLNLDLGDIILECNRQPVNTEAEFYAALLKSPTYVHLKVR
CCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEE
NRQQELIITETAIYNGAPHELGIVLFTDQED
CCCCCEEEEEHHHCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]