| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is comFA [H]
Identifier: 28377596
GI number: 28377596
Start: 672499
End: 673851
Strand: Direct
Name: comFA [H]
Synonym: lp_0735
Alternate gene names: 28377596
Gene position: 672499-673851 (Clockwise)
Preceding gene: 28377594
Following gene: 28377597
Centisome position: 20.33
GC content: 49.96
Gene sequence:
>1353_bases ATGGAAGCACAAGTCTTATACGGTCGTCAGCTCGCATTATCTGCAAATGAGGCTGCCGCAGTACCTGCTGGCACGCAGAT ACTGCCAGCCATGCAGGTTGATGAACATCAAATTATCTGTCAGCGTTGCGGCAGTCACTTGGACCGACTGCGAGCCCAAT TACCCAATCAGCAATATTACTGTTATCAATGTTTAAATTTAGGTCGAGTGAGTACACTAGTTAAACTCTATCATATGCCA GAACCGAATGCTTTTGCAACGGTCCCGGTTTGCACGTGGCAAGGAACCCTAACGCCCCAGCAAGCGGACTGCGCGCAATC AATCAAAGCTAACTTCATGGCGCATAAACGGCAATTATTATGGGCGGTGACGGGAGCTGGAAAAACTGAAATGCTGTTTC CAGGTATTGCGTGGGCGTTAGCGCATCAGTGGCGGGTCGCCATTGCTTCACCACGAGTCGATGTTTGCTTAGAGTTAGCA CCCCGGCTCCAGGCGGCCTTTGCTGATGTTCAAATTGCTGTGCTACATGGCCGCAATCCCGCTCCCTATCAGTATACGCA GCTGACGATTTGTACGACGCATCAATTGCTACGTTTTCGTCAGGCGTTTGACGTATTGATCATTGATGAAGTTGACGCGT TTCCGTTTGCTGCCAATCCCCGTTTGGCGTTTGCAGTGAATCAGGCAGCTAAGGTGGAGGGGGCCATTCTTTATTTGACC GCGACGCCCAGCCAAAGTTTGTTGTCCCAAGTTCATCGTGGTGAGCTTGCAATCAGTTATTTACCATTGCGGTTTCACCA ACATTTATTACCGGCAATTAAGGTTAAGCTACAGCCAAATTGGGCTCGGCTCTTGCAACAAGGAAAATTACCACGAGACC TTATCCGGCAACTCCAACAGTATCAACAACAGCACCAGCGCTTTTTACTATTTGTCCCGCGCATCCAACAATTAGCGCCA GTGTTTGCGGTACTCCAACACTATTTTCCCCATATGACCGGAGAGACGGTGTACTCAGCCGATCCTGAGCGACTGACTAA GGTTCAACAAATGCGGAACCAGCAGTTTCAATACTTAGTTACGACGACGATATTGGAACGAGGGGTGACGTTTCCGGGAA TCGATGTGATTGTGCTTGGTGCGGACGACGAAGTGTTTTCTACGGCTGCCCTCGTCCAGATTGCAGGACGGGTCGGACGC AGCAGTGAGCGTCCGACTGGCCTCGTCTGGTTTATTTGTCACAGTCATAGCCGCAATATCAAACGCGCTCAGCGCCAGAT TCGGGTGATCAATCGAAAGGGGCGACAATTACGTGCTAGCATGCCTACTGTGTCACAACATTATCACGACTAA
Upstream 100 bases:
>100_bases TGTCTTGGGTGATGGTGTAGTAGGGTTTAGTCAAATTAATCGGTTCCTTTCGTGAATAAATCGTTAAATGGCGTACTTGA TAACTAAGGAGGTGCGCACA
Downstream 100 bases:
>100_bases GTTTACGTTGCCCTGGATTCTTAGTTGGCAGCCGGTTATGCGGCCGGTCGTCTGCTCGGTTTGTTGGCGGCAATTTGTAC GCATCGATCGGGCAACGGCA
Product: ATP-dependent DNA helicase/translocase (putative)
Products: NA
Alternate protein names: ATP-dependent helicase ComFA [H]
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MEAQVLYGRQLALSANEAAAVPAGTQILPAMQVDEHQIICQRCGSHLDRLRAQLPNQQYYCYQCLNLGRVSTLVKLYHMP EPNAFATVPVCTWQGTLTPQQADCAQSIKANFMAHKRQLLWAVTGAGKTEMLFPGIAWALAHQWRVAIASPRVDVCLELA PRLQAAFADVQIAVLHGRNPAPYQYTQLTICTTHQLLRFRQAFDVLIIDEVDAFPFAANPRLAFAVNQAAKVEGAILYLT ATPSQSLLSQVHRGELAISYLPLRFHQHLLPAIKVKLQPNWARLLQQGKLPRDLIRQLQQYQQQHQRFLLFVPRIQQLAP VFAVLQHYFPHMTGETVYSADPERLTKVQQMRNQQFQYLVTTTILERGVTFPGIDVIVLGADDEVFSTAALVQIAGRVGR SSERPTGLVWFICHSHSRNIKRAQRQIRVINRKGRQLRASMPTVSQHYHD
Sequences:
>Translated_450_residues MEAQVLYGRQLALSANEAAAVPAGTQILPAMQVDEHQIICQRCGSHLDRLRAQLPNQQYYCYQCLNLGRVSTLVKLYHMP EPNAFATVPVCTWQGTLTPQQADCAQSIKANFMAHKRQLLWAVTGAGKTEMLFPGIAWALAHQWRVAIASPRVDVCLELA PRLQAAFADVQIAVLHGRNPAPYQYTQLTICTTHQLLRFRQAFDVLIIDEVDAFPFAANPRLAFAVNQAAKVEGAILYLT ATPSQSLLSQVHRGELAISYLPLRFHQHLLPAIKVKLQPNWARLLQQGKLPRDLIRQLQQYQQQHQRFLLFVPRIQQLAP VFAVLQHYFPHMTGETVYSADPERLTKVQQMRNQQFQYLVTTTILERGVTFPGIDVIVLGADDEVFSTAALVQIAGRVGR SSERPTGLVWFICHSHSRNIKRAQRQIRVINRKGRQLRASMPTVSQHYHD >Mature_450_residues MEAQVLYGRQLALSANEAAAVPAGTQILPAMQVDEHQIICQRCGSHLDRLRAQLPNQQYYCYQCLNLGRVSTLVKLYHMP EPNAFATVPVCTWQGTLTPQQADCAQSIKANFMAHKRQLLWAVTGAGKTEMLFPGIAWALAHQWRVAIASPRVDVCLELA PRLQAAFADVQIAVLHGRNPAPYQYTQLTICTTHQLLRFRQAFDVLIIDEVDAFPFAANPRLAFAVNQAAKVEGAILYLT ATPSQSLLSQVHRGELAISYLPLRFHQHLLPAIKVKLQPNWARLLQQGKLPRDLIRQLQQYQQQHQRFLLFVPRIQQLAP VFAVLQHYFPHMTGETVYSADPERLTKVQQMRNQQFQYLVTTTILERGVTFPGIDVIVLGADDEVFSTAALVQIAGRVGR SSERPTGLVWFICHSHSRNIKRAQRQIRVINRKGRQLRASMPTVSQHYHD
Specific function: Involved in transformation (competence for DNA uptake). Required for DNA uptake but not for binding. May provide the driving force for transport of DNA through an aqueous channel [H]
COG id: COG4098
COG function: function code L; Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 50881; Mature: 50881
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAQVLYGRQLALSANEAAAVPAGTQILPAMQVDEHQIICQRCGSHLDRLRAQLPNQQYY CCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH CYQCLNLGRVSTLVKLYHMPEPNAFATVPVCTWQGTLTPQQADCAQSIKANFMAHKRQLL HHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEE WAVTGAGKTEMLFPGIAWALAHQWRVAIASPRVDVCLELAPRLQAAFADVQIAVLHGRNP EEEECCCCCEEECCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCEEEEEEECCCC APYQYTQLTICTTHQLLRFRQAFDVLIIDEVDAFPFAANPRLAFAVNQAAKVEGAILYLT CCCEEEEEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEEECCHHCCCCEEEEEE ATPSQSLLSQVHRGELAISYLPLRFHQHLLPAIKVKLQPNWARLLQQGKLPRDLIRQLQQ CCCHHHHHHHHHCCCEEEEEEHHHHHHHHCHHEEEEECCCHHHHHHCCCCCHHHHHHHHH YQQQHQRFLLFVPRIQQLAPVFAVLQHYFPHMTGETVYSADPERLTKVQQMRNQQFQYLV HHHHHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHH TTTILERGVTFPGIDVIVLGADDEVFSTAALVQIAGRVGRSSERPTGLVWFICHSHSRNI HHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHH KRAQRQIRVINRKGRQLRASMPTVSQHYHD HHHHHHHHHHHHCCCEEECCCCHHHHCCCC >Mature Secondary Structure MEAQVLYGRQLALSANEAAAVPAGTQILPAMQVDEHQIICQRCGSHLDRLRAQLPNQQYY CCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH CYQCLNLGRVSTLVKLYHMPEPNAFATVPVCTWQGTLTPQQADCAQSIKANFMAHKRQLL HHHHHCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEE WAVTGAGKTEMLFPGIAWALAHQWRVAIASPRVDVCLELAPRLQAAFADVQIAVLHGRNP EEEECCCCCEEECCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCEEEEEEECCCC APYQYTQLTICTTHQLLRFRQAFDVLIIDEVDAFPFAANPRLAFAVNQAAKVEGAILYLT CCCEEEEEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEEECCHHCCCCEEEEEE ATPSQSLLSQVHRGELAISYLPLRFHQHLLPAIKVKLQPNWARLLQQGKLPRDLIRQLQQ CCCHHHHHHHHHCCCEEEEEEHHHHHHHHCHHEEEEECCCHHHHHHCCCCCHHHHHHHHH YQQQHQRFLLFVPRIQQLAPVFAVLQHYFPHMTGETVYSADPERLTKVQQMRNQQFQYLV HHHHHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHH TTTILERGVTFPGIDVIVLGADDEVFSTAALVQIAGRVGRSSERPTGLVWFICHSHSRNI HHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHH KRAQRQIRVINRKGRQLRASMPTVSQHYHD HHHHHHHHHHHHCCCEEECCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412657; 9384377 [H]