Definition | Lactobacillus plantarum WCFS1, complete genome. |
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Accession | NC_004567 |
Length | 3,308,274 |
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The map label for this gene is 28377538
Identifier: 28377538
GI number: 28377538
Start: 614076
End: 614441
Strand: Direct
Name: 28377538
Synonym: lp_0666
Alternate gene names: NA
Gene position: 614076-614441 (Clockwise)
Preceding gene: 28377537
Following gene: 28377539
Centisome position: 18.56
GC content: 40.98
Gene sequence:
>366_bases ATGAGTGACACACAGGACAGTAGTAAGACATTGAAAAATGTCATTACTCTACTAGGTATTGCTCCTACCGATAGTGAAAA AGAACGACTGACACTATACATTGATCATGCAGAGCAAGCCATTGTTTTATATCTGGGACGCTCAGTTAGAATTTCAGAAT TGCCATCAGGATTAGACTACATTGTAGAGAATTTGGCTGTAACTAAGTTCAATAAGTTCCACAATGAGGGTGAAAAGTCA CACAGTGAAGAAGGGCTGTCTTTTCAGTTCAACGTTAACGATCTAGCACCTTACTATCCAGATCTCCAAGCCTGGATAGA TGGCCAATCTAATACTACTCGTGGCGCTACTGCGATTGGTTGGTGA
Upstream 100 bases:
>100_bases ATAAATTGATTCCAATGGCGCAGTTTGTAACTAGTGCTGATGCTATCGTACCGTCAACAACGGCTGATCCACAAACTGGT AAATAGTCAGGAGGAATCCT
Downstream 100 bases:
>100_bases TAATATGCGCTATCCGGATAAAGTTTATTTGTTAACTAAGCTTCCTGATGATGACCCTAATGGTCTTAATCATCAAGTAA GTTATCAAAGCCAAGTAGTG
Product: prophage Lp1 protein 43
Products: NA
Alternate protein names: Prophage Lp2 Protein
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSDTQDSSKTLKNVITLLGIAPTDSEKERLTLYIDHAEQAIVLYLGRSVRISELPSGLDYIVENLAVTKFNKFHNEGEKS HSEEGLSFQFNVNDLAPYYPDLQAWIDGQSNTTRGATAIGW
Sequences:
>Translated_121_residues MSDTQDSSKTLKNVITLLGIAPTDSEKERLTLYIDHAEQAIVLYLGRSVRISELPSGLDYIVENLAVTKFNKFHNEGEKS HSEEGLSFQFNVNDLAPYYPDLQAWIDGQSNTTRGATAIGW >Mature_120_residues SDTQDSSKTLKNVITLLGIAPTDSEKERLTLYIDHAEQAIVLYLGRSVRISELPSGLDYIVENLAVTKFNKFHNEGEKSH SEEGLSFQFNVNDLAPYYPDLQAWIDGQSNTTRGATAIGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13506; Mature: 13375
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTQDSSKTLKNVITLLGIAPTDSEKERLTLYIDHAEQAIVLYLGRSVRISELPSGLDY CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEHHHCCCHHHH IVENLAVTKFNKFHNEGEKSHSEEGLSFQFNVNDLAPYYPDLQAWIDGQSNTTRGATAIG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHEEECCCCCCCCCCEECC W C >Mature Secondary Structure SDTQDSSKTLKNVITLLGIAPTDSEKERLTLYIDHAEQAIVLYLGRSVRISELPSGLDY CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEHHHCCCHHHH IVENLAVTKFNKFHNEGEKSHSEEGLSFQFNVNDLAPYYPDLQAWIDGQSNTTRGATAIG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHEEECCCCCCCCCCEECC W C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA