Definition | Lactobacillus plantarum WCFS1, complete genome. |
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Accession | NC_004567 |
Length | 3,308,274 |
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The map label for this gene is 28377511
Identifier: 28377511
GI number: 28377511
Start: 597601
End: 598155
Strand: Direct
Name: 28377511
Synonym: lp_0637
Alternate gene names: NA
Gene position: 597601-598155 (Clockwise)
Preceding gene: 28377510
Following gene: 28377512
Centisome position: 18.06
GC content: 40.9
Gene sequence:
>555_bases ATGTCAACACAGTCTAGCTCAGTATTTGCAGGTAGCACGTTGACTGATGTAATGAATCATAACAGCGTAGCGCCTATTGA ACTGAGCGGCAAGGTAGGCTACTCAGTAACGCTTATTTACAAACAAAGGCATGATCAGGCACGTATTCGAATAGAATCAG TACCAGCATTTCTAGCAGCATTACCTAATCAAAATCAATTCTTTGCAATTGAATTGGCACATCGATTTGTCGGCGTTACG ACGCCAGTGATTGATGGCGACCGAATTATGAAGGAACCATTAGCAATGGCTGTTAAAACTATGCCGGAATTAAGCCAAGC ACTAGCGGCTATTCAGGATTCACTTGATGAACTAACGATACCCAAAGAGGATTTGAAGCCAAATGACTTTGATGATCCCA AAAAATTAGTCGCTGAGTGTTTTGATGCAGTGCTTTACTTGTTAAACCTAATCGCATACGTGTGTCGTGGCTTTGATTTG TCTATGCAAGATCAGCTTAAACAGCGAATGAAAAAATGGTTTAAAGATGGAGTCGTTAAACATAGGAAGGAGTGA
Upstream 100 bases:
>100_bases CGGGGACCGGAACGAATTTTACGAGATGATTAACTCTTAATTATATTATCCGGCGTTTTTAATTCAGGTTAAACCCATAA AACTGAAAGGTGGTGATGGA
Downstream 100 bases:
>100_bases TAGAGATGATGATCTCAATGCAAAACGACGCTGAGTTTATCGATGCTGTAGCTGTTGCGGTAGCCGATAGAATCATGCCA CAACTGGAAGTGCTGGTAAA
Product: prophage Lp1 protein 14
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MSTQSSSVFAGSTLTDVMNHNSVAPIELSGKVGYSVTLIYKQRHDQARIRIESVPAFLAALPNQNQFFAIELAHRFVGVT TPVIDGDRIMKEPLAMAVKTMPELSQALAAIQDSLDELTIPKEDLKPNDFDDPKKLVAECFDAVLYLLNLIAYVCRGFDL SMQDQLKQRMKKWFKDGVVKHRKE
Sequences:
>Translated_184_residues MSTQSSSVFAGSTLTDVMNHNSVAPIELSGKVGYSVTLIYKQRHDQARIRIESVPAFLAALPNQNQFFAIELAHRFVGVT TPVIDGDRIMKEPLAMAVKTMPELSQALAAIQDSLDELTIPKEDLKPNDFDDPKKLVAECFDAVLYLLNLIAYVCRGFDL SMQDQLKQRMKKWFKDGVVKHRKE >Mature_183_residues STQSSSVFAGSTLTDVMNHNSVAPIELSGKVGYSVTLIYKQRHDQARIRIESVPAFLAALPNQNQFFAIELAHRFVGVTT PVIDGDRIMKEPLAMAVKTMPELSQALAAIQDSLDELTIPKEDLKPNDFDDPKKLVAECFDAVLYLLNLIAYVCRGFDLS MQDQLKQRMKKWFKDGVVKHRKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20671; Mature: 20540
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQSSSVFAGSTLTDVMNHNSVAPIELSGKVGYSVTLIYKQRHDQARIRIESVPAFLAA CCCCCCCEECCHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCHHHEEHHHHHHHHHH LPNQNQFFAIELAHRFVGVTTPVIDGDRIMKEPLAMAVKTMPELSQALAAIQDSLDELTI CCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKEDLKPNDFDDPKKLVAECFDAVLYLLNLIAYVCRGFDLSMQDQLKQRMKKWFKDGVVK CHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH HRKE HCCC >Mature Secondary Structure STQSSSVFAGSTLTDVMNHNSVAPIELSGKVGYSVTLIYKQRHDQARIRIESVPAFLAA CCCCCCEECCHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCHHHEEHHHHHHHHHH LPNQNQFFAIELAHRFVGVTTPVIDGDRIMKEPLAMAVKTMPELSQALAAIQDSLDELTI CCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PKEDLKPNDFDDPKKLVAECFDAVLYLLNLIAYVCRGFDLSMQDQLKQRMKKWFKDGVVK CHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH HRKE HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA