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The map label for this gene is sigH

Identifier: 28377490

GI number: 28377490

Start: 584948

End: 585550

Strand: Direct

Name: sigH

Synonym: lp_0614

Alternate gene names: NA

Gene position: 584948-585550 (Clockwise)

Preceding gene: 28377489

Following gene: 28377491

Centisome position: 17.68

GC content: 46.93

Gene sequence:

>603_bases
GTGCAGTTTCTGAAACTAGTCAGAAGCGAGGAATGTCACGTGAATGAACAGCAATTGATCCACTTAGCAGCAGATGGTGA
TGATGCAAGCATTAATGCATTAGCCCAGCAGTATGTGCCAGTTGTTTGGCGGTTGCGGCGGCAATACTATGTCCGGAACT
TTGACGAGGATGATTGGCTTCAAGAAGGTCGAATTGCAGTTTATCGAGCGGCTAAAAAGTATCAACGGCTACGGCAATGT
AGCTTTGGCACTTATTACCGGGTGCTATTGAGTAATCAGATTATTGATCATATTCGGCGGACACAAGCTCGCAAGCGTCG
TCCGGAAGGGGATATCTTATCACTGGATGTTAATGATGAGGATATCTTATGCAATATTCAGACGCTAAGGGCCTCGACCC
TTGATGTGGTTCATGTTCGTGAGCAGGTGCGGATTTTTCCAGCAATCTGTTCGGCATTTGAAGGATTGGTTTTTATGGAT
CTATTGGCAGGGCAATCGCCAGAACGGATTGCATTGAGTCGGCAAGTGGAAGTTGATCAAGTGGTCAACGCCACGGATCG
ATGCCGCAAGAAGATGCGTGACTTTTTACAAGACGCTGCCTGA

Upstream 100 bases:

>100_bases
TAAGAGGATTTCTGTGAGTGCTGAGGTGGCTGAATTGAAACGTTCGTTCGCTTGTGACGGCACAATTAACCCGGTATATT
AGCATTACAGATGCTCAGGG

Downstream 100 bases:

>100_bases
AATTGACATTCGAAAAGTTCCATGCTAATGTTATACCTGATTTATTATGGAGGTTTTGTCGATGGCACAGAAAAAAGTTG
CACTGGCATGTACCGTTTGT

Product: DNA-directed RNA polymerase, sigma factor 30

Products: NA

Alternate protein names: RNA Polymerase Sigma-30 Factor; DNA-Directed RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Subunit; RNA Polymerase Factor Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor; DNA-Directed RNA Polymerase Sigma Factor Sigma H; RNA Polymerase Sigma-H Factor

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQFLKLVRSEECHVNEQQLIHLAADGDDASINALAQQYVPVVWRLRRQYYVRNFDEDDWLQEGRIAVYRAAKKYQRLRQC
SFGTYYRVLLSNQIIDHIRRTQARKRRPEGDILSLDVNDEDILCNIQTLRASTLDVVHVREQVRIFPAICSAFEGLVFMD
LLAGQSPERIALSRQVEVDQVVNATDRCRKKMRDFLQDAA

Sequences:

>Translated_200_residues
MQFLKLVRSEECHVNEQQLIHLAADGDDASINALAQQYVPVVWRLRRQYYVRNFDEDDWLQEGRIAVYRAAKKYQRLRQC
SFGTYYRVLLSNQIIDHIRRTQARKRRPEGDILSLDVNDEDILCNIQTLRASTLDVVHVREQVRIFPAICSAFEGLVFMD
LLAGQSPERIALSRQVEVDQVVNATDRCRKKMRDFLQDAA
>Mature_200_residues
MQFLKLVRSEECHVNEQQLIHLAADGDDASINALAQQYVPVVWRLRRQYYVRNFDEDDWLQEGRIAVYRAAKKYQRLRQC
SFGTYYRVLLSNQIIDHIRRTQARKRRPEGDILSLDVNDEDILCNIQTLRASTLDVVHVREQVRIFPAICSAFEGLVFMD
LLAGQSPERIALSRQVEVDQVVNATDRCRKKMRDFLQDAA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23370; Mature: 23370

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFLKLVRSEECHVNEQQLIHLAADGDDASINALAQQYVPVVWRLRRQYYVRNFDEDDWL
CHHHHHHCCCCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QEGRIAVYRAAKKYQRLRQCSFGTYYRVLLSNQIIDHIRRTQARKRRPEGDILSLDVNDE
HHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
DILCNIQTLRASTLDVVHVREQVRIFPAICSAFEGLVFMDLLAGQSPERIALSRQVEVDQ
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHH
VVNATDRCRKKMRDFLQDAA
HHCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQFLKLVRSEECHVNEQQLIHLAADGDDASINALAQQYVPVVWRLRRQYYVRNFDEDDWL
CHHHHHHCCCCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QEGRIAVYRAAKKYQRLRQCSFGTYYRVLLSNQIIDHIRRTQARKRRPEGDILSLDVNDE
HHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
DILCNIQTLRASTLDVVHVREQVRIFPAICSAFEGLVFMDLLAGQSPERIALSRQVEVDQ
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHH
VVNATDRCRKKMRDFLQDAA
HHCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA