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The map label for this gene is mrnC [H]

Identifier: 28377487

GI number: 28377487

Start: 582727

End: 583137

Strand: Direct

Name: mrnC [H]

Synonym: lp_0611

Alternate gene names: 28377487

Gene position: 582727-583137 (Clockwise)

Preceding gene: 28377486

Following gene: 28377488

Centisome position: 17.61

GC content: 46.72

Gene sequence:

>411_bases
ATGCAAGTTGATTATCAACAATTAAACGGGATTGCACTCGCGTACCTCGGTGACGCGGTGTATGAACCGTTTATTCGCCA
ACATTTGATTGAAAGTGGTTTTACTAAAGCCACTAAGTTGCACCACCACGCAACCCACTATGTTTCAGCCAAAGCGCAAG
CGGCACTGATCGAACGGATGCAGGCCGAAGAAGTTTTAACGCCAACTGAAGTGGACGTTTTTAAGCGTGGACGGAATGCC
AAGAGTCATACGTCGGCCAAACATACCGATGTCGTCACTTACCGGATCTCAACCGGTTTTGAAGCCGTTTTTGGGTATTT
ACAATTGACTCAGCAGGCGGACCGAATTGCAGAACTGGCACAGTGGTGTATTAAACAAGTTGATGAAGGGAGGGTTTCCA
GTGTCAAATAA

Upstream 100 bases:

>100_bases
AAGGATTTTGCTAAGGCCGACCAGATTCGTGATGATTTGAAAGTTCAGGGGATTATGTTAGAAGATACGCCTCAGGGTGT
GCGGTTTAGAAAGGAATAAT

Downstream 100 bases:

>100_bases
CGAACAAGACCAAACAGCAGCTGACTTTGTAATCGGGCGGCACCCCGCCATGGCAGCAATCAAGAGTGATCAACAGATCA
ACAAAGTCTTTATTCAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MQVDYQQLNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLTPTEVDVFKRGRNA
KSHTSAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAELAQWCIKQVDEGRVSSVK

Sequences:

>Translated_136_residues
MQVDYQQLNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLTPTEVDVFKRGRNA
KSHTSAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAELAQWCIKQVDEGRVSSVK
>Mature_136_residues
MQVDYQQLNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLTPTEVDVFKRGRNA
KSHTSAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAELAQWCIKQVDEGRVSSVK

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15319; Mature: 15319

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVDYQQLNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERM
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAEEVLTPTEVDVFKRGRNAKSHTSAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAELA
HHHHCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
QWCIKQVDEGRVSSVK
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQVDYQQLNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERM
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAEEVLTPTEVDVFKRGRNAKSHTSAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAELA
HHHHCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
QWCIKQVDEGRVSSVK
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]