| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is 28377437
Identifier: 28377437
GI number: 28377437
Start: 511742
End: 512200
Strand: Direct
Name: 28377437
Synonym: lp_0554
Alternate gene names: NA
Gene position: 511742-512200 (Clockwise)
Preceding gene: 28377436
Following gene: 28377438
Centisome position: 15.47
GC content: 42.05
Gene sequence:
>459_bases ATGACGGCCATCACAATTATTATGAGTCGTTCTTATAAAAGCACACCAATTTTTAAAGCACATATGGGTTATGGAAAGAA GCGCGCTAACCGTGCTGTTCGAAATCGTATGAATCGTGGTGAATTTGATGTTTTGCCGGCTAATTCGCATGCCTGGTATA AACGATGTTATGAGCAGTATGATGTTGTCGATTATTGCTCCAGAGAGACTTATTCGCAAGTTCAACTTGAGCTGGAGACG ATGCGATTAGAGATTACTCGTAACGGTGGGATTATTCGAAGAATCCCACAACATTTGGTTGTTACGTATACTTTTGATCC GGTGATATCTGATATTGTGCACATGCAGCGAACGGAAGAACTAATTCCTGCGCAAGATGTCCAAATGTTTGTAGGTACTT TTGAACAGTGGTGTCGGGAGCGTCGCAACTGCTGGGCCAAGGCTTATTATCGAAAATAA
Upstream 100 bases:
>100_bases ATAGGAGGTCTGGTCAATGAATTTATTTATTCCGTCAGTACACGGAAGAGGTTAATGGCTGGCATTGTTAATTTTAAAAA TACGTACTAGTTAACGGGTC
Downstream 100 bases:
>100_bases GTCGTATTGGAACTTGATCTATGAGATTTGGTTGAAGAGGCTACGTAGCCTTAGTTGTCCCACTACCAGCCCCAACTAGT TGACTGAATAAATCAAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MTAITIIMSRSYKSTPIFKAHMGYGKKRANRAVRNRMNRGEFDVLPANSHAWYKRCYEQYDVVDYCSRETYSQVQLELET MRLEITRNGGIIRRIPQHLVVTYTFDPVISDIVHMQRTEELIPAQDVQMFVGTFEQWCRERRNCWAKAYYRK
Sequences:
>Translated_152_residues MTAITIIMSRSYKSTPIFKAHMGYGKKRANRAVRNRMNRGEFDVLPANSHAWYKRCYEQYDVVDYCSRETYSQVQLELET MRLEITRNGGIIRRIPQHLVVTYTFDPVISDIVHMQRTEELIPAQDVQMFVGTFEQWCRERRNCWAKAYYRK >Mature_151_residues TAITIIMSRSYKSTPIFKAHMGYGKKRANRAVRNRMNRGEFDVLPANSHAWYKRCYEQYDVVDYCSRETYSQVQLELETM RLEITRNGGIIRRIPQHLVVTYTFDPVISDIVHMQRTEELIPAQDVQMFVGTFEQWCRERRNCWAKAYYRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18170; Mature: 18039
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAITIIMSRSYKSTPIFKAHMGYGKKRANRAVRNRMNRGEFDVLPANSHAWYKRCYEQY CCEEEEEEECCCCCCCEEEHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH DVVDYCSRETYSQVQLELETMRLEITRNGGIIRRIPQHLVVTYTFDPVISDIVHMQRTEE HHHHHHHHHHHHHHHHEEEHEEEEEECCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH LIPAQDVQMFVGTFEQWCRERRNCWAKAYYRK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAITIIMSRSYKSTPIFKAHMGYGKKRANRAVRNRMNRGEFDVLPANSHAWYKRCYEQY CEEEEEEECCCCCCCEEEHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH DVVDYCSRETYSQVQLELETMRLEITRNGGIIRRIPQHLVVTYTFDPVISDIVHMQRTEE HHHHHHHHHHHHHHHHEEEHEEEEEECCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH LIPAQDVQMFVGTFEQWCRERRNCWAKAYYRK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA