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The map label for this gene is yodJ [H]

Identifier: 28199670

GI number: 28199670

Start: 2102052

End: 2102660

Strand: Reverse

Name: yodJ [H]

Synonym: PD1799

Alternate gene names: 28199670

Gene position: 2102660-2102052 (Counterclockwise)

Preceding gene: 28199671

Following gene: 77747711

Centisome position: 83.45

GC content: 53.53

Gene sequence:

>609_bases
ATGAATGTATCCAGCTCCAACGAAGACACGCCGAATGCGCCTGACATGCTGTCTTGGTGTGTACACACTCAGGACAATCA
TCCCTTACCATTGCCCGAACTGAAGGCAAAGTTGTTAGCGTTAGGCATTGATGCCGATACATACGCCCTTACAACGGGGT
TATCAATGGAGTTAGAACCCACAACCCTTGCCGATGCTGGCTATGACCGTTACCAGCGTCCGTTATTGCTTACGGTCGAT
GCAGCGCGTGCCTGGCATGCCATGCGTCAGGCCGCTGTAGGCGATGGGATTGTTCTTGATGCGATTTCAGGCTATCGCAG
CTACGCGTATCAGTTCGGTATTTTGGAGCGCAAGCTCGCCCAAGGAAAAACATTGCAAGAGATTCTCACTGTTAACGCGG
CCCCGGGTTTCAGTGAGCACCATAGCGGCGAGGCGCTGGATATTGGCATGCCTGGCGAGTCGCCTGTGGAGGAAAGTTTT
GAAGGTAGCAGCGCGTTTGCCTGGTTGCACAGACACGCTGGACGATTCGGTTTCCATCTCAGTTATCCTCGCAACAATCC
ACATGGGATTGTCTATGAGCCTTGGCATTGGCGCTGGCGTGCTCGCTGA

Upstream 100 bases:

>100_bases
AGGCTGATCGCGTTGTGCGTTGAATCGTTTTTCATAGCCATTCTATTTTTCCCCAGTTGCACGGGTGTGACGTGGTAGGC
AGCAAATAGCATCACTGTGT

Downstream 100 bases:

>100_bases
GTATTCGATCTTGATCGCTGAAGTGCTCCATGCTTCTGTCTTTGGATAAGGCGACTGCATCGTATGAGCGATTGTGTGGA
GCGATGATTGCGGCGGTTCT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNVSSSNEDTPNAPDMLSWCVHTQDNHPLPLPELKAKLLALGIDADTYALTTGLSMELEPTTLADAGYDRYQRPLLLTVD
AARAWHAMRQAAVGDGIVLDAISGYRSYAYQFGILERKLAQGKTLQEILTVNAAPGFSEHHSGEALDIGMPGESPVEESF
EGSSAFAWLHRHAGRFGFHLSYPRNNPHGIVYEPWHWRWRAR

Sequences:

>Translated_202_residues
MNVSSSNEDTPNAPDMLSWCVHTQDNHPLPLPELKAKLLALGIDADTYALTTGLSMELEPTTLADAGYDRYQRPLLLTVD
AARAWHAMRQAAVGDGIVLDAISGYRSYAYQFGILERKLAQGKTLQEILTVNAAPGFSEHHSGEALDIGMPGESPVEESF
EGSSAFAWLHRHAGRFGFHLSYPRNNPHGIVYEPWHWRWRAR
>Mature_202_residues
MNVSSSNEDTPNAPDMLSWCVHTQDNHPLPLPELKAKLLALGIDADTYALTTGLSMELEPTTLADAGYDRYQRPLLLTVD
AARAWHAMRQAAVGDGIVLDAISGYRSYAYQFGILERKLAQGKTLQEILTVNAAPGFSEHHSGEALDIGMPGESPVEESF
EGSSAFAWLHRHAGRFGFHLSYPRNNPHGIVYEPWHWRWRAR

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 22468; Mature: 22468

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSSSNEDTPNAPDMLSWCVHTQDNHPLPLPELKAKLLALGIDADTYALTTGLSMELEP
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCEEEECCCEEEECC
TTLADAGYDRYQRPLLLTVDAARAWHAMRQAAVGDGIVLDAISGYRSYAYQFGILERKLA
CCCCCCCCHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHH
QGKTLQEILTVNAAPGFSEHHSGEALDIGMPGESPVEESFEGSSAFAWLHRHAGRFGFHL
CCCHHHHHHEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCEEEE
SYPRNNPHGIVYEPWHWRWRAR
ECCCCCCCEEEECCCCEEEECC
>Mature Secondary Structure
MNVSSSNEDTPNAPDMLSWCVHTQDNHPLPLPELKAKLLALGIDADTYALTTGLSMELEP
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCEEEECCCEEEECC
TTLADAGYDRYQRPLLLTVDAARAWHAMRQAAVGDGIVLDAISGYRSYAYQFGILERKLA
CCCCCCCCHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHH
QGKTLQEILTVNAAPGFSEHHSGEALDIGMPGESPVEESFEGSSAFAWLHRHAGRFGFHL
CCCHHHHHHEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCEEEE
SYPRNNPHGIVYEPWHWRWRAR
ECCCCCCCEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]