Definition | Xylella fastidiosa Temecula1, complete genome. |
---|---|
Accession | NC_004556 |
Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28199155
Identifier: 28199155
GI number: 28199155
Start: 1478242
End: 1478580
Strand: Reverse
Name: 28199155
Synonym: PD1269
Alternate gene names: NA
Gene position: 1478580-1478242 (Counterclockwise)
Preceding gene: 28199156
Following gene: 28199154
Centisome position: 58.68
GC content: 61.95
Gene sequence:
>339_bases ATGAAACAACGTCCAATCCCCCGTCCCCAAACCGATACCACCGCTGCATTACAGGCATTAGCCGACGCCCTTGCCTGCCT TAGAAACAGCGCCACAGTCCTTGCCTTTCTCCGTGACCTGTGTACCCCAGCCGAGTTGGAAGCGCTGGCCGACCGCTGGC GCGTCGTGCCCTTGCTGCTCCAAGGCCGGCCCTACCGTGACATCCACGACCACACCGGCATCAGCGTCACCACCATCGGC CGTGTCGCGCGTTGCCTTGAACACGGTACCGGCGGCTATGCAGCGGTATTGCAGGCCCAGGCCATGCCTCCTGCCAGCTC CATTGAGAAACCACAATGA
Upstream 100 bases:
>100_bases CAGAGCATGGAGCCTGCTGTTATCTATCCCGCATCGTATTTCATGGGATCCTCTCCATCCCCCTGTGTACTAATGTAATA GTTCGCTATACCATTCCCCG
Downstream 100 bases:
>100_bases GTGCGTCCACCGCATTACCGGTACGCGATCGACTGCGTATTGCGATTCAAAAAAGTGGGCGTTTGACAGAACCGGCCCGC CGCCTCCTGACGGCTTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 112; Mature: 112
Protein sequence:
>112_residues MKQRPIPRPQTDTTAALQALADALACLRNSATVLAFLRDLCTPAELEALADRWRVVPLLLQGRPYRDIHDHTGISVTTIG RVARCLEHGTGGYAAVLQAQAMPPASSIEKPQ
Sequences:
>Translated_112_residues MKQRPIPRPQTDTTAALQALADALACLRNSATVLAFLRDLCTPAELEALADRWRVVPLLLQGRPYRDIHDHTGISVTTIG RVARCLEHGTGGYAAVLQAQAMPPASSIEKPQ >Mature_112_residues MKQRPIPRPQTDTTAALQALADALACLRNSATVLAFLRDLCTPAELEALADRWRVVPLLLQGRPYRDIHDHTGISVTTIG RVARCLEHGTGGYAAVLQAQAMPPASSIEKPQ
Specific function: Unknown
COG id: COG4496
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12125; Mature: 12125
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRPIPRPQTDTTAALQALADALACLRNSATVLAFLRDLCTPAELEALADRWRVVPLLL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QGRPYRDIHDHTGISVTTIGRVARCLEHGTGGYAAVLQAQAMPPASSIEKPQ CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKQRPIPRPQTDTTAALQALADALACLRNSATVLAFLRDLCTPAELEALADRWRVVPLLL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QGRPYRDIHDHTGISVTTIGRVARCLEHGTGGYAAVLQAQAMPPASSIEKPQ CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA