Definition | Xylella fastidiosa Temecula1, complete genome. |
---|---|
Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is btuE [H]
Identifier: 28199059
GI number: 28199059
Start: 1372474
End: 1373052
Strand: Reverse
Name: btuE [H]
Synonym: PD1169
Alternate gene names: 28199059
Gene position: 1373052-1372474 (Counterclockwise)
Preceding gene: 28199063
Following gene: 28199058
Centisome position: 54.49
GC content: 49.91
Gene sequence:
>579_bases ATGAACATGCTCAATGTGTTGAGGTTTCCCGTTTTGGCTTTGGCTTTGGCTTTTGTTTCTAGTGGTGTACTGGCCGATGT GGGGAGTTTGCTGGATTTGGATTACCGTCCGTTGGCCGGTAAAGAGACTGTCAATTTGCAGCGCCTTTATGGTGGCAAGG TGCTGTTGGTGGTCAATACCGCCAGTAAATGTGGTTTTACCCCGCAATACGAAGGATTAGAGGCATTGCACCAGAAATTG TCGCCACTTGGTTTTGCTGTACTTGGTTTTCCATCCAACGACTTTAAGGGGCAAGAACCAGGTGATGAGCAGCAAATTCA GGAATTCTGCACGCTGACGTATGGGGTTAAGTTTCCAATGTTTCAGAAGGTTCACGTCAAAGGCAATGAGGTCACGCCAC TGTATCAGCGCTTGACGCAGACGACGGGTGTGGCACCGGGCTGGAACTTTCACAAGTACCTCATTGCGCGTGATGGCCAT GTTGTGGCTCAGTTTGATAGCCGTACGCGGCCTGATGATCCAATTCTGTTGGAAGCGATCAAGCGTGAGTTGGCAAAGTC GGTGCAGGTAGTGCACTGA
Upstream 100 bases:
>100_bases AGGTAAAAAATTTCGCACGATATGCAGGCAATGACCTGTGATGCGCAAGCGATGGCGATACAGTGACCTGATTGATGGTG CCTGCTCCTAGGGAGAATAG
Downstream 100 bases:
>100_bases TTGGGCACACGTGCAGCAACGGCTTGTATCCCTGCGGCAGTCGTTGTTGCTCCCATTGGGAAGACACGTTGCTGAGTGAA GGTGTGTGCTGGAATACGCT
Product: glutathione peroxidase/vitamin B12 uptake permease
Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MNMLNVLRFPVLALALAFVSSGVLADVGSLLDLDYRPLAGKETVNLQRLYGGKVLLVVNTASKCGFTPQYEGLEALHQKL SPLGFAVLGFPSNDFKGQEPGDEQQIQEFCTLTYGVKFPMFQKVHVKGNEVTPLYQRLTQTTGVAPGWNFHKYLIARDGH VVAQFDSRTRPDDPILLEAIKRELAKSVQVVH
Sequences:
>Translated_192_residues MNMLNVLRFPVLALALAFVSSGVLADVGSLLDLDYRPLAGKETVNLQRLYGGKVLLVVNTASKCGFTPQYEGLEALHQKL SPLGFAVLGFPSNDFKGQEPGDEQQIQEFCTLTYGVKFPMFQKVHVKGNEVTPLYQRLTQTTGVAPGWNFHKYLIARDGH VVAQFDSRTRPDDPILLEAIKRELAKSVQVVH >Mature_192_residues MNMLNVLRFPVLALALAFVSSGVLADVGSLLDLDYRPLAGKETVNLQRLYGGKVLLVVNTASKCGFTPQYEGLEALHQKL SPLGFAVLGFPSNDFKGQEPGDEQQIQEFCTLTYGVKFPMFQKVHVKGNEVTPLYQRLTQTTGVAPGWNFHKYLIARDGH VVAQFDSRTRPDDPILLEAIKRELAKSVQVVH
Specific function: Not essential for B12 transport; however, it is an auxiliary component of the transport system [H]
COG id: COG0386
COG function: function code O; Glutathione peroxidase
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutathione peroxidase family [H]
Homologues:
Organism=Homo sapiens, GI15618997, Length=124, Percent_Identity=49.1935483870968, Blast_Score=120, Evalue=9e-28, Organism=Homo sapiens, GI192455698, Length=166, Percent_Identity=37.3493975903614, Blast_Score=109, Evalue=1e-24, Organism=Homo sapiens, GI75709200, Length=135, Percent_Identity=38.5185185185185, Blast_Score=88, Evalue=5e-18, Organism=Homo sapiens, GI90903240, Length=135, Percent_Identity=38.5185185185185, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI90903238, Length=117, Percent_Identity=39.3162393162393, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI4557629, Length=166, Percent_Identity=31.3253012048193, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI6006001, Length=197, Percent_Identity=30.4568527918782, Blast_Score=73, Evalue=1e-13, Organism=Escherichia coli, GI1788003, Length=169, Percent_Identity=44.3786982248521, Blast_Score=146, Evalue=9e-37, Organism=Caenorhabditis elegans, GI17535473, Length=146, Percent_Identity=38.3561643835616, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17506887, Length=152, Percent_Identity=37.5, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71993584, Length=185, Percent_Identity=31.8918918918919, Blast_Score=87, Evalue=4e-18, Organism=Caenorhabditis elegans, GI193210707, Length=154, Percent_Identity=35.7142857142857, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17550320, Length=184, Percent_Identity=26.6304347826087, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6319721, Length=148, Percent_Identity=45.945945945946, Blast_Score=133, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6322228, Length=143, Percent_Identity=45.4545454545455, Blast_Score=128, Evalue=7e-31, Organism=Saccharomyces cerevisiae, GI6322826, Length=138, Percent_Identity=37.6811594202899, Blast_Score=106, Evalue=2e-24, Organism=Drosophila melanogaster, GI24656772, Length=180, Percent_Identity=32.7777777777778, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24656767, Length=169, Percent_Identity=32.5443786982249, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI24656777, Length=161, Percent_Identity=34.1614906832298, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI85726443, Length=124, Percent_Identity=37.0967741935484, Blast_Score=79, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000889 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00255 GSHPx [H]
EC number: NA
Molecular weight: Translated: 21272; Mature: 21272
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: PS00460 GLUTATHIONE_PEROXID_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMLNVLRFPVLALALAFVSSGVLADVGSLLDLDYRPLAGKETVNLQRLYGGKVLLVVNT CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHEECCCEEEEEEEC ASKCGFTPQYEGLEALHQKLSPLGFAVLGFPSNDFKGQEPGDEQQIQEFCTLTYGVKFPM CHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC FQKVHVKGNEVTPLYQRLTQTTGVAPGWNFHKYLIARDGHVVAQFDSRTRPDDPILLEAI EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCHHHHHHH KRELAKSVQVVH HHHHHHHHCCCC >Mature Secondary Structure MNMLNVLRFPVLALALAFVSSGVLADVGSLLDLDYRPLAGKETVNLQRLYGGKVLLVVNT CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHEECCCEEEEEEEC ASKCGFTPQYEGLEALHQKLSPLGFAVLGFPSNDFKGQEPGDEQQIQEFCTLTYGVKFPM CHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC FQKVHVKGNEVTPLYQRLTQTTGVAPGWNFHKYLIARDGHVVAQFDSRTRPDDPILLEAI EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCHHHHHHH KRELAKSVQVVH HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]
Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3528129; 9097039; 9278503 [H]