Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is scrK [H]
Identifier: 28199053
GI number: 28199053
Start: 1365412
End: 1366428
Strand: Reverse
Name: scrK [H]
Synonym: PD1163
Alternate gene names: 28199053
Gene position: 1366428-1365412 (Counterclockwise)
Preceding gene: 28199054
Following gene: 28199052
Centisome position: 54.23
GC content: 50.64
Gene sequence:
>1017_bases GTGAGCGTTGCACTGTCTATTGATCTGTCTAAAAAGAAAACGATTCTTTGTTTTGGTGAAGCATTGATCGATATGTTGGC GCAGCCTCTGGTAAAGAAGGGAATGCCACGTGCGTTTCTGCAATGTGCTGGAGGTGCACCGGCCAACGTCGCGGTGGCGG TCGCCAGGTTAGGTGGTGCGGTGCAGTTTGTTGGCATGCTTGGTAGTGACATGTTCGGTGATTTTCTGTTCGACAGTTTT GCCGAGGCGGGTGTGGTGACTGATGGCATTGTGCGTACTAGTACGGCAAAAACAGCATTGGCTTTTGTGGCGCTGGATGC ACATGGTGAACGTAGTTTCAGTTTCTACAGGCCGCCAGCGGCTGACTTGTTATTTCGTGTTGAGCATTTTCAAGATGCGA GTTTTTCCGATGCACTGATATTCCATGCGTGTTCCAATAGTATGACGGATGCAGACATTGCCGAAGTGACTTTTGAAGGG ATGCGACGTGCGCAGGCCGCTGGTGCAATCGTCAGTTTTGACCTGAATTTTCGTCCGATGTTATGGCCGAATGGAGAAAA TCCGGCATCGCGGTTGTGGAAAGGTTTGTCTTTAGCTGATGTGGTCAAACTATCTAGTGAAGAATTGGATTATTTAGCCA ATACGCTCGCTGCAGATGCGAATGCGGTGATTCAGCAATTATGGCAGGGCAGGGCGCAGTTGCTGTTGGTTACTGATGCC GCTGGTCCGGTACATTGGTACACGCGTACCGCGGGGGGGGAAGTACCGACATTCCGTGTCCAGGTACAAGACAGTAATGC AGCGGGTGATGCTTTCGTTGGAGGCATGTTGTACACGTTTGCACAGCAGTTTGATGATGCCGCCGCGCTGATTGATTTTT GCCATGATCCCGAGTCGATTGTGAGTACGTTGCGTTTTGCTGCTGCAGTGGGTGCGCTTGCCGTGACGCGTCAAGGGGCT TTCACTGCTATGCCGATGCTTTCTGAGGTTCTTTCTTTGATTCAAGAGCAATCATGA
Upstream 100 bases:
>100_bases TGCAGGTGTCGTTCTTGCTGCCGCTGTTTTGTTATCTCTACATTGTGTTCTATGGAATATGGGGTTCGTGTATCCGCGGT GTACTGACTGAGCGTCTGTC
Downstream 100 bases:
>100_bases CTCCATTACCTGCAACTCCTGTTCCGGATTTCCGTTCAGCGGATTTCCTGCGTACACATATCAGCGACACCATGGCGTTT TATCATCCTCGCTGTATCGA
Product: fructokinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSVALSIDLSKKKTILCFGEALIDMLAQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSF AEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSMTDADIAEVTFEG MRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDA AGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGA FTAMPMLSEVLSLIQEQS
Sequences:
>Translated_338_residues MSVALSIDLSKKKTILCFGEALIDMLAQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSF AEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSMTDADIAEVTFEG MRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDA AGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGA FTAMPMLSEVLSLIQEQS >Mature_337_residues SVALSIDLSKKKTILCFGEALIDMLAQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSFA EAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSMTDADIAEVTFEGM RRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAA GPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAF TAMPMLSEVLSLIQEQS
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI87082281, Length=288, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87082343, Length=334, Percent_Identity=26.3473053892216, Blast_Score=73, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR002139 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.4 [H]
Molecular weight: Translated: 36078; Mature: 35947
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS00583 PFKB_KINASES_1 ; PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVALSIDLSKKKTILCFGEALIDMLAQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGA CEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHCCH VQFVGMLGSDMFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPA HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEECCHHHHEEEEEEEECCCCCCCEECCCCH ADLLFRVEHFQDASFSDALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPM HHHHHHHHHHCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDA ECCCCCCHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEC AGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESI CCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH VSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQEQS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVALSIDLSKKKTILCFGEALIDMLAQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGA EEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHCCH VQFVGMLGSDMFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPA HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEECCHHHHEEEEEEEECCCCCCCEECCCCH ADLLFRVEHFQDASFSDALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPM HHHHHHHHHHCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDA ECCCCCCHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEC AGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESI CCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH VSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQEQS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2174811 [H]