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The map label for this gene is ppdD [C]

Identifier: 28198971

GI number: 28198971

Start: 1278577

End: 1279119

Strand: Reverse

Name: ppdD [C]

Synonym: PD1077

Alternate gene names: 28198971

Gene position: 1279119-1278577 (Counterclockwise)

Preceding gene: 28198974

Following gene: 28198970

Centisome position: 50.76

GC content: 48.62

Gene sequence:

>543_bases
ATGGAAAAGAGACAACAAGGCTTCACCCTGTTAGAGGTCATGATCGCGCTTATAGTGGTCCCTGTTCTCGCGGCAATTAC
GTTACCGCTATATCAGAATTACATCGCTAAAGCGCAAGTGACGGTAGCACTAGCGGATATCACGCCGGGGAGGGTGGGCG
TTGAAATGCAGCTCATTAAAGGACAGCGCACCCAAAGCCCAAGCGATATCAGTTTGCACGCGCCTACAACGCGCTGCCGG
AGTATTACGGTTGATGTAGAGGCACCGAGAACGCGATCCTTTATTGATCCGAACGGAAAAGAAAGAGTAGTGCCCGCTAA
TAGCCCAATGCCATCTATCACATGCGTTATCAACGGCACTAGCGCAGTTGATGGCAAATTCATCCAATGGCTGCGTATAT
CCGATGTAGGTTTGCATGGCTCAAGCGCCGATACCAACGGCAATAACATAGTAGGTAAATGGTTTTGCCTAACAAACGTC
GACGAAGAATTAAGGCCGATAGCATGTAAAGACTCATTTCCCGATGTGCCTGCATATTCTTAA

Upstream 100 bases:

>100_bases
ACGCTGCCTGGTTCAAGTGTTTTAGAGATGTCTAATTTATTTATCCTATTAAACCGATTGAATCGTTAGTAGCACACTTT
CAAAGATTAGGGGAATTTTT

Downstream 100 bases:

>100_bases
CCGAACGAGTAATGAGCGCCGATGTGTTCGGCAGTCCCGCGCCGCCGCCACTCCCATATAAAAGGTGTCCACGCGGCGGA
GCGTTCGGACAATGGCTAAG

Product: fimbrillin

Products: NA

Alternate protein names: Fimbrial Protein Pilin; Fimbrial Protein; Tfp Pilus Assembly Protein Pilin PilA; Fimbrial Protein PilA; Fimbrial Protein Pilin General Secretion Pathway Protein H

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MEKRQQGFTLLEVMIALIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIKGQRTQSPSDISLHAPTTRCR
SITVDVEAPRTRSFIDPNGKERVVPANSPMPSITCVINGTSAVDGKFIQWLRISDVGLHGSSADTNGNNIVGKWFCLTNV
DEELRPIACKDSFPDVPAYS

Sequences:

>Translated_180_residues
MEKRQQGFTLLEVMIALIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIKGQRTQSPSDISLHAPTTRCR
SITVDVEAPRTRSFIDPNGKERVVPANSPMPSITCVINGTSAVDGKFIQWLRISDVGLHGSSADTNGNNIVGKWFCLTNV
DEELRPIACKDSFPDVPAYS
>Mature_180_residues
MEKRQQGFTLLEVMIALIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIKGQRTQSPSDISLHAPTTRCR
SITVDVEAPRTRSFIDPNGKERVVPANSPMPSITCVINGTSAVDGKFIQWLRISDVGLHGSSADTNGNNIVGKWFCLTNV
DEELRPIACKDSFPDVPAYS

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19564; Mature: 19564

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRQQGFTLLEVMIALIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIK
CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEEEEEC
GQRTQSPSDISLHAPTTRCRSITVDVEAPRTRSFIDPNGKERVVPANSPMPSITCVINGT
CCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC
SAVDGKFIQWLRISDVGLHGSSADTNGNNIVGKWFCLTNVDEELRPIACKDSFPDVPAYS
CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHCCEEECCCCCCCCCCC
>Mature Secondary Structure
MEKRQQGFTLLEVMIALIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIK
CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEEEEEC
GQRTQSPSDISLHAPTTRCRSITVDVEAPRTRSFIDPNGKERVVPANSPMPSITCVINGT
CCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC
SAVDGKFIQWLRISDVGLHGSSADTNGNNIVGKWFCLTNVDEELRPIACKDSFPDVPAYS
CCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA