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The map label for this gene is secB

Identifier: 28198960

GI number: 28198960

Start: 1268414

End: 1268932

Strand: Reverse

Name: secB

Synonym: PD1065

Alternate gene names: 28198960

Gene position: 1268932-1268414 (Counterclockwise)

Preceding gene: 28198961

Following gene: 28198959

Centisome position: 50.36

GC content: 45.86

Gene sequence:

>519_bases
ATGTCCGACGAAATTACCAACGGCGCTGCTAAACCGACTGAAGCAATCTCTGGTCCTACCTTTACTATCGAGAAGATTTA
CATCAAGGATGTTTCTTTTGAGGCTCCGAATTCACCGGCAGTTTTCAATGAGGCTGGCCAACCGGAATTACAGCTGAATC
TGAACCAAAGAGTCCAACGTCTAAATGAAAACGCCTTCGAACTGGTGTTACATGTGACTTTAACCTGTACTGCTGCAGGA
AAAACCGCTTATGTAGTTGAAGTACAGCAGGCTGGTGTGTTTGGCTTATTTGGGTTGGATCAACATGCAATCGGTGTGTT
ACTTGGCACCCAATGTCCGAACATTCTGTTCCCTTATGTACGTTCATTGGTGAGCGATCTTATCCAGATAGGTGGTTTCC
CACCATTTTATTTGCAACCAATTAATTTCGACGCGCTGTACGCTGAAACCCTCCGCCAACGTGCTCAAAATGAAAAGGAA
GGTTCGCAGATCAGTTCCCAGCCAGCTGGTAACGCTTAG

Upstream 100 bases:

>100_bases
TCATCCATCATCAGGTACATCACTCATGTGATACTCACAACGTGTTTGCTAATCCTCACATCTATTTACCCAAATCATCA
AATCATTTCTGGAGTTAGAA

Downstream 100 bases:

>100_bases
TTTTGGTGAATGTTACAAGGATGATCGATTCTAAGCAGAAAATTGCCGTTCTTGGTGCCGGCTCTTGGGGAACTGCTCTT
GCGGCATTGGTTGCGAGGCA

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSDEITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNENAFELVLHVTLTCTAAG
KTAYVVEVQQAGVFGLFGLDQHAIGVLLGTQCPNILFPYVRSLVSDLIQIGGFPPFYLQPINFDALYAETLRQRAQNEKE
GSQISSQPAGNA

Sequences:

>Translated_172_residues
MSDEITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNENAFELVLHVTLTCTAAG
KTAYVVEVQQAGVFGLFGLDQHAIGVLLGTQCPNILFPYVRSLVSDLIQIGGFPPFYLQPINFDALYAETLRQRAQNEKE
GSQISSQPAGNA
>Mature_171_residues
SDEITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQRLNENAFELVLHVTLTCTAAGK
TAYVVEVQQAGVFGLFGLDQHAIGVLLGTQCPNILFPYVRSLVSDLIQIGGFPPFYLQPINFDALYAETLRQRAQNEKEG
SQISSQPAGNA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=144, Percent_Identity=43.75, Blast_Score=138, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_XYLF2 (B2I5B5)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001829832.1
- ProteinModelPortal:   B2I5B5
- SMR:   B2I5B5
- GeneID:   6203649
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1130
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18684; Mature: 18553

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQR
CCCCCCCCCCCCCHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHH
LNENAFELVLHVTLTCTAAGKTAYVVEVQQAGVFGLFGLDQHAIGVLLGTQCPNILFPYV
HCCCHHHEEEEEEEEEEECCCEEEEEEEECCCEEEEECCCHHHHHEEECCCCCHHHHHHH
RSLVSDLIQIGGFPPFYLQPINFDALYAETLRQRAQNEKEGSQISSQPAGNA
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SDEITNGAAKPTEAISGPTFTIEKIYIKDVSFEAPNSPAVFNEAGQPELQLNLNQRVQR
CCCCCCCCCCCCHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHH
LNENAFELVLHVTLTCTAAGKTAYVVEVQQAGVFGLFGLDQHAIGVLLGTQCPNILFPYV
HCCCHHHEEEEEEEEEEECCCEEEEEEEECCCEEEEECCCHHHHHEEECCCCCHHHHHHH
RSLVSDLIQIGGFPPFYLQPINFDALYAETLRQRAQNEKEGSQISSQPAGNA
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA