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The map label for this gene is yscS [H]

Identifier: 62185508

GI number: 62185508

Start: 1062123

End: 1062407

Strand: Direct

Name: yscS [H]

Synonym: CAB908

Alternate gene names: 62185508

Gene position: 1062123-1062407 (Clockwise)

Preceding gene: 62185507

Following gene: 62185509

Centisome position: 92.81

GC content: 39.65

Gene sequence:

>285_bases
GTGATAGCACTCGCCGCAAGTTTTAAATCCATGCTCTTTGAGTATTCCTATCAGTCGTTGTTACTGATTTTGATTATCTC
TGCGCCTCCGATTATCCTGGCCTCTATTGTGGGTATCATGGTTGCCATCTTCCAAGCAGCAACACAAATCCAAGAACAAA
CATTTGCGTTTGCTATTAAGTTAGTCGTGATTTTTGGCACCTTGATGATTTCTGGGGGGTGGCTAAGCAATATGATTTTC
CGTTTTGCTTCTCAAATCTTCCAAAACTTTTATAAATGGAAATAA

Upstream 100 bases:

>100_bases
ATCGATTTCGCTACCTTTAAAATTACTTCTTGTTGTGATGGTGGATGGTTGGACGTTATTACTTCAAGGTCTCATGATTA
GCTTTAAATAGGGATATGCC

Downstream 100 bases:

>100_bases
ACAGCTATGGCAATCTCTTTACCAGAGCTTGTTTCTGTTTTTGAGTCTACATACCTTAATTACATTTTGCAAAAGCCTCC
GGCTTATGTTTGGAGTGTCT

Product: putative type III export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MIALAASFKSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLSNMIF
RFASQIFQNFYKWK

Sequences:

>Translated_94_residues
MIALAASFKSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLSNMIF
RFASQIFQNFYKWK
>Mature_94_residues
MIALAASFKSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLSNMIF
RFASQIFQNFYKWK

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 10577; Mature: 10577

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALAASFKSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVIFGTLMISGGWLSNMIFRFASQIFQNFYKWK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIALAASFKSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVIFGTLMISGGWLSNMIFRFASQIFQNFYKWK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]