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The map label for this gene is yscL [H]

Identifier: 62185506

GI number: 62185506

Start: 1060525

End: 1061181

Strand: Direct

Name: yscL [H]

Synonym: CAB906

Alternate gene names: 62185506

Gene position: 1060525-1061181 (Clockwise)

Preceding gene: 62185505

Following gene: 62185507

Centisome position: 92.67

GC content: 35.31

Gene sequence:

>657_bases
ATGAAGTTTTTTAGTCTAATTTTTAAACATGACGAAGTCGTACCGAATAAAAAAGTCCTTGCTCCGGAGGCTTTTTCAGC
TCTGCTTGACGCTAAAGAACTCTTAGAAAAAACAAAAGAAGATAGTGAATCTTACACTAATGCAACAAAAGAAGAATGTG
AAGTATTACGTAAAAATGCGAAAGAGCAAGGCTTTAAAGAAGGCTGTGAACAATGGAATTCTCAACTTGCCTATTTAGAA
AAAGAAACTCATAGTCTCCGTAATAAAGTTAAAGAAGCTCTTGTTCCTTTAGCTATTGCTAGTGTGAAAAAGATTCTCGG
TAAAGAATTAGAAATCCATCCAGAAACTATTGTTTCTATTATTGCTAAAGCATTGAAAGAACTCACTCAACATAAAAAGA
TCATCATCCACGTCAATCCCAAAGATCTTGCCATTGTTGAGCAAAACCGCCCTGAGTTGAAAAAAATCGTTGAGTATGCT
GATACATTGATTATTGCTCCTAAAGCAGATGTGACACAAGGAGGTTGTGTCATAGAAACAGAAGCAGGTATAGTAAATGC
TCAGCTGGATGTACAATTAGCTGCTTTAGAAAAAGCGTTCTCTACTATACTAAAACAACAAAATCCTGTAGATGAAGCTC
AGAACAAGCAAGAATAA

Upstream 100 bases:

>100_bases
GTTGAGTGTTAATAATAAGGAATGAAAATAACGAAAAGAAGGAGCAGCGTTTCCTCTCTAAACATTAAAAAATCTTAGGG
TTTTATGCGCTGTTAAATGA

Downstream 100 bases:

>100_bases
AGGTATTTGACATCATGCGTTTCATTTTTCGTACTTTCCTGTGTATGTTTATCTTGAGCGCACCGTGGTGTCTTGCAGAT
AACGGATTATACGATACCTC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATKEECEVLRKNAKEQGFKEGCEQWNSQLAYLE
KETHSLRNKVKEALVPLAIASVKKILGKELEIHPETIVSIIAKALKELTQHKKIIIHVNPKDLAIVEQNRPELKKIVEYA
DTLIIAPKADVTQGGCVIETEAGIVNAQLDVQLAALEKAFSTILKQQNPVDEAQNKQE

Sequences:

>Translated_218_residues
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATKEECEVLRKNAKEQGFKEGCEQWNSQLAYLE
KETHSLRNKVKEALVPLAIASVKKILGKELEIHPETIVSIIAKALKELTQHKKIIIHVNPKDLAIVEQNRPELKKIVEYA
DTLIIAPKADVTQGGCVIETEAGIVNAQLDVQLAALEKAFSTILKQQNPVDEAQNKQE
>Mature_218_residues
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATKEECEVLRKNAKEQGFKEGCEQWNSQLAYLE
KETHSLRNKVKEALVPLAIASVKKILGKELEIHPETIVSIIAKALKELTQHKKIIIHVNPKDLAIVEQNRPELKKIVEYA
DTLIIAPKADVTQGGCVIETEAGIVNAQLDVQLAALEKAFSTILKQQNPVDEAQNKQE

Specific function: Required for the export process of the Yop proteins [H]

COG id: COG1317

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018035
- InterPro:   IPR012842 [H]

Pfam domain/function: PF02108 FliH [H]

EC number: NA

Molecular weight: Translated: 24436; Mature: 24436

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATKEECEVLRKNA
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KEQGFKEGCEQWNSQLAYLEKETHSLRNKVKEALVPLAIASVKKILGKELEIHPETIVSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAKALKELTQHKKIIIHVNPKDLAIVEQNRPELKKIVEYADTLIIAPKADVTQGGCVIET
HHHHHHHHHHCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHEEECCCCCCCCCCEEEEE
EAGIVNAQLDVQLAALEKAFSTILKQQNPVDEAQNKQE
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATKEECEVLRKNA
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KEQGFKEGCEQWNSQLAYLEKETHSLRNKVKEALVPLAIASVKKILGKELEIHPETIVSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAKALKELTQHKKIIIHVNPKDLAIVEQNRPELKKIVEYADTLIIAPKADVTQGGCVIET
HHHHHHHHHHCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHEEECCCCCCCCCCEEEEE
EAGIVNAQLDVQLAALEKAFSTILKQQNPVDEAQNKQE
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]