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The map label for this gene is ompB [H]

Identifier: 62185483

GI number: 62185483

Start: 1024568

End: 1025602

Strand: Direct

Name: ompB [H]

Synonym: CAB881

Alternate gene names: 62185483

Gene position: 1024568-1025602 (Clockwise)

Preceding gene: 62185482

Following gene: 62185489

Centisome position: 89.53

GC content: 41.64

Gene sequence:

>1035_bases
ATGAATAGCAAGCTGAAAAAGCACCTACGTTTAGCATCATTTTCTCTCCTAGCTTTATCAAGAATGTTCTCCTCCTTTGC
CCTTAATGCTATGCCATCGGGGAATCCTGCAAGTCCTGTAATTCCTAATATTAATCCTGAACAAAAGGGAATGTGTGCTT
TTGAAATCTGCAATAGCTACAATCTCTTTGCAGCACTGACCGGCAGCTTAAAAATAGGATTTTCCGGTGATTATGTTTTT
TCAGAAAGTGCGCGTATAAGTAATGTTCCCGTAGTGACCTCAGTGACTACAATGAACACAGGTCCCTCGCCTACAGTCAC
CTCAACAACCAAAGACTTCGATTTTAATTTAAATGATTCTAAAGTGAGCTCTAGCTGTGTCTTTGCCTCAGTAGCTATCC
AAGATACTTCACCAGCAGCTATCCCCCTTTTAGACATTAGTTTTGATGTGAAAATCGGTGGCTTAAAACAATACTACCGT
CTTCCCCTGAACGCTTACCGAGATTATACCTCTTCTCCTCTAGCCTCCGAATCGCAAGTTACCGACGGTTTAGTAGAAGT
TCAAAGCAATTATGGTTTCGTTTGGGATCTAAGTTTGAAAAAGATCCTTTGGAAAGATGGGATTTCTTTCATAGGTATTG
GTGCGGATTATCGTCATGCCGCATGTCCAGTCAACTACATTGTTGTGAATAGTCAAGCCAACCCTGAAGTGTACTTCGAA
GACTCTAAAGGAAAAATCAGCTATAAAGAATGGTCGGCAAATATCGGCATTACCACCTATGTAAACGATTACATTCTTCC
TTATATTTCCGCTTCTGTAGGGAATGCTTCAAGGCAAGCCCCTGCCGATAGTTTCAAACGTTTGGAAAGCCAATTCACCA
ACTTGAAGTTTAAAGTGCGCAAAATCAATAACTTCCACCGAGTAAACTTTTGCTGTGGGGCTACTTGCTGCGCGTCTGAC
AACTTTTTCTATAATGTTGAAGGTCGTTGGGGTTGCCAACGCGCCATAAATGTAACCGCAGGTCTCCAATTCTAA

Upstream 100 bases:

>100_bases
TTAGACAGAAGGCTCCTCCTACTGAGTTTTCATTTGTACATTTTTTTACCATTTGTTAAAGATGAATTTATAACGCATAG
TAAATAAGGTCATCTACTAA

Downstream 100 bases:

>100_bases
TAAGAACTAATTAACGTACGATACACGTTATGTATCAGTTTCAATGATGCTGCTATTAAGCTCCACTCTTGCTGCATAGC
ACGCATCTGAAGCTCCAACA

Product: putative exported outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MNSKLKKHLRLASFSLLALSRMFSSFALNAMPSGNPASPVIPNINPEQKGMCAFEICNSYNLFAALTGSLKIGFSGDYVF
SESARISNVPVVTSVTTMNTGPSPTVTSTTKDFDFNLNDSKVSSSCVFASVAIQDTSPAAIPLLDISFDVKIGGLKQYYR
LPLNAYRDYTSSPLASESQVTDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVNYIVVNSQANPEVYFE
DSKGKISYKEWSANIGITTYVNDYILPYISASVGNASRQAPADSFKRLESQFTNLKFKVRKINNFHRVNFCCGATCCASD
NFFYNVEGRWGCQRAINVTAGLQF

Sequences:

>Translated_344_residues
MNSKLKKHLRLASFSLLALSRMFSSFALNAMPSGNPASPVIPNINPEQKGMCAFEICNSYNLFAALTGSLKIGFSGDYVF
SESARISNVPVVTSVTTMNTGPSPTVTSTTKDFDFNLNDSKVSSSCVFASVAIQDTSPAAIPLLDISFDVKIGGLKQYYR
LPLNAYRDYTSSPLASESQVTDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVNYIVVNSQANPEVYFE
DSKGKISYKEWSANIGITTYVNDYILPYISASVGNASRQAPADSFKRLESQFTNLKFKVRKINNFHRVNFCCGATCCASD
NFFYNVEGRWGCQRAINVTAGLQF
>Mature_344_residues
MNSKLKKHLRLASFSLLALSRMFSSFALNAMPSGNPASPVIPNINPEQKGMCAFEICNSYNLFAALTGSLKIGFSGDYVF
SESARISNVPVVTSVTTMNTGPSPTVTSTTKDFDFNLNDSKVSSSCVFASVAIQDTSPAAIPLLDISFDVKIGGLKQYYR
LPLNAYRDYTSSPLASESQVTDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVNYIVVNSQANPEVYFE
DSKGKISYKEWSANIGITTYVNDYILPYISASVGNASRQAPADSFKRLESQFTNLKFKVRKINNFHRVNFCCGATCCASD
NFFYNVEGRWGCQRAINVTAGLQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chlamydial OMP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37792; Mature: 37792

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKLKKHLRLASFSLLALSRMFSSFALNAMPSGNPASPVIPNINPEQKGMCAFEICNSY
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
NLFAALTGSLKIGFSGDYVFSESARISNVPVVTSVTTMNTGPSPTVTSTTKDFDFNLNDS
CEEEEEECCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCEECCCCCEECCCCCC
KVSSSCVFASVAIQDTSPAAIPLLDISFDVKIGGLKQYYRLPLNAYRDYTSSPLASESQV
CCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCHHHHHCCCHHHCCCCCCCCCCCHHH
TDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVNYIVVNSQANPEVYFE
HCCCEEECCCCCEEEECHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEEE
DSKGKISYKEWSANIGITTYVNDYILPYISASVGNASRQAPADSFKRLESQFTNLKFKVR
CCCCEEEEEEECCCCCEEEEECCEEHHHEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEE
KINNFHRVNFCCGATCCASDNFFYNVEGRWGCQRAINVTAGLQF
ECCCEEEEEEEECCEEECCCCEEEEECCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNSKLKKHLRLASFSLLALSRMFSSFALNAMPSGNPASPVIPNINPEQKGMCAFEICNSY
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
NLFAALTGSLKIGFSGDYVFSESARISNVPVVTSVTTMNTGPSPTVTSTTKDFDFNLNDS
CEEEEEECCEEECCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCEECCCCCEECCCCCC
KVSSSCVFASVAIQDTSPAAIPLLDISFDVKIGGLKQYYRLPLNAYRDYTSSPLASESQV
CCCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCCHHHHHCCCHHHCCCCCCCCCCCHHH
TDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVNYIVVNSQANPEVYFE
HCCCEEECCCCCEEEECHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEEE
DSKGKISYKEWSANIGITTYVNDYILPYISASVGNASRQAPADSFKRLESQFTNLKFKVR
CCCCEEEEEEECCCCCEEEEECCEEHHHEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEE
KINNFHRVNFCCGATCCASDNFFYNVEGRWGCQRAINVTAGLQF
ECCCEEEEEEEECCEEECCCCEEEEECCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362; 10839753 [H]