| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
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The map label for this gene is lpxB
Identifier: 62185371
GI number: 62185371
Start: 879519
End: 881402
Strand: Direct
Name: lpxB
Synonym: CAB759
Alternate gene names: 62185371
Gene position: 879519-881402 (Clockwise)
Preceding gene: 62185370
Following gene: 62185378
Centisome position: 76.86
GC content: 38.8
Gene sequence:
>1884_bases ATGTTTCCTCTTTATCTGGTTCGTCTACTGTATCCTATAGGACTAATAGCTAATCTATTTTTTGGCTTTGCGTTTACTCT CCAGTGGTTTCTAAGTGAAAGACACAAAAGAGCTTGTGTCCCTAAGGCTTTTTGGATCTTTTCATCCATAGGGGCGATTT TGATGATTGCTCACGGCTTTATTCAAAGTCAATTTCCTATAGCACTTCTCCACGGGGCAAATTTGGTTATCTATTTTAGG AACCTAAATATCTCTTCTTCCCGTAAGCTCTCTTTAAAAACAACTTTGATCATTCTTGCTGTAACACTGCTTCTCACTGC ATTACCTTTTGCCTTAGAAGCTTACTATCATCCTAACATGCAGTGGATGGCTTCTCCTAATATCTTTCACCTTCCTCTAC CCCCACCGAATATGTATTGGCATATGATTGGTTGTTTAGGATTGTTCACTTTTTCGTGTAGATTCTTTATTCAATGGTGC CACTTAGAAATGAATAATCAATCGACATTACCGGTGCTATTCTGGCAGGTAGGTTTTGTGGGAGGTTTCCTGGCCTTTCT TTATTTTATACGCACAGGAGATCCTGTAAATATTCTGAGTTATGGTTGTGGATTGTTTCCCTCCATAGCTAATTTACGCA TTATATATAAGAAATCACGTCTTTCGGAATTTCACAACCCCAGCTACTTCATATCTGCTGGAGAAGCTAGTGGCGACACT TTAGGCAGCGACCTTCTTCGCCATATCAAAGCTCTTCATCCCGATAAGCGTTGTTTTGGTGTTGGAGGACCTTTAATGCG CCAAGAAGGTCTTGAACCTCTAATCCACATGGAAGAGTTTCAAGTGTCAGGATTCTTAGAAATCCTCACCTCTATCTTTA CTCTGATTAAGAAATACCGAAAGTTATACAAAGCTATTCTTAAAGAAAATCCTGAGATAGTCTTCTGCATAGATTTCCCA GACTTTCATTTTTTCCTTATTAAAAAGCTAAGAAAATGCGGTTATACAGGAAAAATCGTTCACTATGTCTGTCCGAGTAT TTGGGCATGGCGACCTAAAAGAAAAAAGATCCTAGAAAAGTATTTAGATACCCTTTTGCTCATACTTCCTTTTGAAAATG AGCTTTTCATAAACTCCCCTTTAAAAACGATCTATCTAGGACATCCTTTAGTAAAGACGATATCGAATTTCCAACATTGC CCATCCTGGAAACAAGCTCTCGCTATTTCTGATCAACCTATTGTTGCCCTGTTTCCGGGTAGCCGACCTGGGGATATTCT CAGAAATTTACAAGTACACATTCGTGCATTTCTTGCCTCATCATTAGCAGAATCACATCAGCTTCTGGTATCTTCTTACA ACCTGAAACACGATCAGACCATCCTCGACCTCTTAGAAAAAGAAGGTTGTTGTGGTAAAACTGTCCCGGCGATGTACCGT TATCACCTTATGCGAGATTGCGATTGTGCCTTAGCAAAATGTGGAACTATTGCTCTGGAAGCCGCTTTAAATCAAACACC CACAATTGTCACCTGTCTTCTTCGACCTTTTGATATCTTTTTAGCCAAGTATATCTTTAAGATCTTTATGTCTGCATATT CCCTCCCAAATATCATTACCAAATCGATTATCTTCCCAGAATTTATAGGAGGTAAATCTGACTTTACTCCTGAAGAAGTA GCAGCAGCTATAGATATCCTTGCTAATCCTAAATCTAGAGAAAAACAAAAACGTGCGTGTCAGACACTTCTTGAAACAAT GGAAACAAATGTGGTGACGGTTCAAGAATGTTTACAAACTATACACTCATTAAAAAGTCGTTTTCATACAGAAAATGATT GCTTAGGGAACTACGTCCAGAAGAATGTTAGGCCGAGTTTTTAA
Upstream 100 bases:
>100_bases TTAGTTTATCCTAAGCTAGATAAAATACTTGCTGCTTGGATAAAGCATTACCAAGCATTACAATTTAAAAAGGAACTTCC TTCTTGAGTTTAAACTAGCC
Downstream 100 bases:
>100_bases CTTTTTCTATGATGTCTGACTACAACAAGTAGTGCTTTTCTCCCTACATAGATGGGAACAGGGTGACGGGGAAAGATGAA TAATCTGAGATGATCGAATG
Product: lipid-A-disaccharide synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MFPLYLVRLLYPIGLIANLFFGFAFTLQWFLSERHKRACVPKAFWIFSSIGAILMIAHGFIQSQFPIALLHGANLVIYFR NLNISSSRKLSLKTTLIILAVTLLLTALPFALEAYYHPNMQWMASPNIFHLPLPPPNMYWHMIGCLGLFTFSCRFFIQWC HLEMNNQSTLPVLFWQVGFVGGFLAFLYFIRTGDPVNILSYGCGLFPSIANLRIIYKKSRLSEFHNPSYFISAGEASGDT LGSDLLRHIKALHPDKRCFGVGGPLMRQEGLEPLIHMEEFQVSGFLEILTSIFTLIKKYRKLYKAILKENPEIVFCIDFP DFHFFLIKKLRKCGYTGKIVHYVCPSIWAWRPKRKKILEKYLDTLLLILPFENELFINSPLKTIYLGHPLVKTISNFQHC PSWKQALAISDQPIVALFPGSRPGDILRNLQVHIRAFLASSLAESHQLLVSSYNLKHDQTILDLLEKEGCCGKTVPAMYR YHLMRDCDCALAKCGTIALEAALNQTPTIVTCLLRPFDIFLAKYIFKIFMSAYSLPNIITKSIIFPEFIGGKSDFTPEEV AAAIDILANPKSREKQKRACQTLLETMETNVVTVQECLQTIHSLKSRFHTENDCLGNYVQKNVRPSF
Sequences:
>Translated_627_residues MFPLYLVRLLYPIGLIANLFFGFAFTLQWFLSERHKRACVPKAFWIFSSIGAILMIAHGFIQSQFPIALLHGANLVIYFR NLNISSSRKLSLKTTLIILAVTLLLTALPFALEAYYHPNMQWMASPNIFHLPLPPPNMYWHMIGCLGLFTFSCRFFIQWC HLEMNNQSTLPVLFWQVGFVGGFLAFLYFIRTGDPVNILSYGCGLFPSIANLRIIYKKSRLSEFHNPSYFISAGEASGDT LGSDLLRHIKALHPDKRCFGVGGPLMRQEGLEPLIHMEEFQVSGFLEILTSIFTLIKKYRKLYKAILKENPEIVFCIDFP DFHFFLIKKLRKCGYTGKIVHYVCPSIWAWRPKRKKILEKYLDTLLLILPFENELFINSPLKTIYLGHPLVKTISNFQHC PSWKQALAISDQPIVALFPGSRPGDILRNLQVHIRAFLASSLAESHQLLVSSYNLKHDQTILDLLEKEGCCGKTVPAMYR YHLMRDCDCALAKCGTIALEAALNQTPTIVTCLLRPFDIFLAKYIFKIFMSAYSLPNIITKSIIFPEFIGGKSDFTPEEV AAAIDILANPKSREKQKRACQTLLETMETNVVTVQECLQTIHSLKSRFHTENDCLGNYVQKNVRPSF >Mature_627_residues MFPLYLVRLLYPIGLIANLFFGFAFTLQWFLSERHKRACVPKAFWIFSSIGAILMIAHGFIQSQFPIALLHGANLVIYFR NLNISSSRKLSLKTTLIILAVTLLLTALPFALEAYYHPNMQWMASPNIFHLPLPPPNMYWHMIGCLGLFTFSCRFFIQWC HLEMNNQSTLPVLFWQVGFVGGFLAFLYFIRTGDPVNILSYGCGLFPSIANLRIIYKKSRLSEFHNPSYFISAGEASGDT LGSDLLRHIKALHPDKRCFGVGGPLMRQEGLEPLIHMEEFQVSGFLEILTSIFTLIKKYRKLYKAILKENPEIVFCIDFP DFHFFLIKKLRKCGYTGKIVHYVCPSIWAWRPKRKKILEKYLDTLLLILPFENELFINSPLKTIYLGHPLVKTISNFQHC PSWKQALAISDQPIVALFPGSRPGDILRNLQVHIRAFLASSLAESHQLLVSSYNLKHDQTILDLLEKEGCCGKTVPAMYR YHLMRDCDCALAKCGTIALEAALNQTPTIVTCLLRPFDIFLAKYIFKIFMSAYSLPNIITKSIIFPEFIGGKSDFTPEEV AAAIDILANPKSREKQKRACQTLLETMETNVVTVQECLQTIHSLKSRFHTENDCLGNYVQKNVRPSF
Specific function: Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
COG id: COG0763
COG function: function code M; Lipid A disaccharide synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the lpxB family
Homologues:
Organism=Escherichia coli, GI1786379, Length=331, Percent_Identity=31.4199395770393, Blast_Score=141, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LPXB_CHLAB (Q5L586)
Other databases:
- EMBL: CR848038 - RefSeq: YP_220156.1 - ProteinModelPortal: Q5L586 - GeneID: 3337870 - GenomeReviews: CR848038_GR - KEGG: cab:CAB759 - HOGENOM: HBG414066 - OMA: CALAKCG - PhylomeDB: Q5L586 - ProtClustDB: PRK01021 - BioCyc: CABO218497:CAB759-MONOMER - BRENDA: 2.4.1.182 - HAMAP: MF_00392 - InterPro: IPR003835 - InterPro: IPR011499 - ProDom: PD339292 - TIGRFAMs: TIGR00215
Pfam domain/function: PF07578 LAB_N; PF02684 LpxB
EC number: =2.4.1.182
Molecular weight: Translated: 71610; Mature: 71610
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPLYLVRLLYPIGLIANLFFGFAFTLQWFLSERHKRACVPKAFWIFSSIGAILMIAHGF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IQSQFPIALLHGANLVIYFRNLNISSSRKLSLKTTLIILAVTLLLTALPFALEAYYHPNM HHCCCCEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QWMASPNIFHLPLPPPNMYWHMIGCLGLFTFSCRFFIQWCHLEMNNQSTLPVLFWQVGFV CEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH GGFLAFLYFIRTGDPVNILSYGCGLFPSIANLRIIYKKSRLSEFHNPSYFISAGEASGDT HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHCEEEEEEHHHHHHHCCCCEEEECCCCCCCH LGSDLLRHIKALHPDKRCFGVGGPLMRQEGLEPLIHMEEFQVSGFLEILTSIFTLIKKYR HHHHHHHHHHHHCCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLYKAILKENPEIVFCIDFPDFHFFLIKKLRKCGYTGKIVHYVCPSIWAWRPKRKKILEK HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHH YLDTLLLILPFENELFINSPLKTIYLGHPLVKTISNFQHCPSWKQALAISDQPIVALFPG HHHHHEEEECCCCCEEECCCHHHEEECCHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCC SRPGDILRNLQVHIRAFLASSLAESHQLLVSSYNLKHDQTILDLLEKEGCCGKTVPAMYR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH YHLMRDCDCALAKCGTIALEAALNQTPTIVTCLLRPFDIFLAKYIFKIFMSAYSLPNIIT HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH KSIIFPEFIGGKSDFTPEEVAAAIDILANPKSREKQKRACQTLLETMETNVVTVQECLQT HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH IHSLKSRFHTENDCLGNYVQKNVRPSF HHHHHHHCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MFPLYLVRLLYPIGLIANLFFGFAFTLQWFLSERHKRACVPKAFWIFSSIGAILMIAHGF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IQSQFPIALLHGANLVIYFRNLNISSSRKLSLKTTLIILAVTLLLTALPFALEAYYHPNM HHCCCCEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QWMASPNIFHLPLPPPNMYWHMIGCLGLFTFSCRFFIQWCHLEMNNQSTLPVLFWQVGFV CEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH GGFLAFLYFIRTGDPVNILSYGCGLFPSIANLRIIYKKSRLSEFHNPSYFISAGEASGDT HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHCEEEEEEHHHHHHHCCCCEEEECCCCCCCH LGSDLLRHIKALHPDKRCFGVGGPLMRQEGLEPLIHMEEFQVSGFLEILTSIFTLIKKYR HHHHHHHHHHHHCCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLYKAILKENPEIVFCIDFPDFHFFLIKKLRKCGYTGKIVHYVCPSIWAWRPKRKKILEK HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHH YLDTLLLILPFENELFINSPLKTIYLGHPLVKTISNFQHCPSWKQALAISDQPIVALFPG HHHHHEEEECCCCCEEECCCHHHEEECCHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCC SRPGDILRNLQVHIRAFLASSLAESHQLLVSSYNLKHDQTILDLLEKEGCCGKTVPAMYR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH YHLMRDCDCALAKCGTIALEAALNQTPTIVTCLLRPFDIFLAKYIFKIFMSAYSLPNIIT HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH KSIIFPEFIGGKSDFTPEEVAAAIDILANPKSREKQKRACQTLLETMETNVVTVQECLQT HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH IHSLKSRFHTENDCLGNYVQKNVRPSF HHHHHHHCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA