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The map label for this gene is dppB [H]

Identifier: 62185191

GI number: 62185191

Start: 653061

End: 654032

Strand: Direct

Name: dppB [H]

Synonym: CAB575

Alternate gene names: 62185191

Gene position: 653061-654032 (Clockwise)

Preceding gene: 62185190

Following gene: 62185192

Centisome position: 57.07

GC content: 40.33

Gene sequence:

>972_bases
ATGTTCCGTTATATAAAGAAACGCCTGGTATTTAACTTGCTTTCTTTATGGATTATCCTAACCCTAACTTTCCTCGTCAT
GAAAACCATTCCCGGTGACCCATTTAATGATGAAAGTAGCAACACCCTGTCACAAGAAACTCTACAGATCCTGAAGTCCC
GCTACGGATTAAATAAGCCCCTATATCAGCAGTACATTCATTATCTCAAATCCTTAGTCACTTTAGATTTTGGGAACTCC
CTTGTTTACAAAGATCGTAGCGTAACGAGCATTATCGCCACAGCATTTCCAGCCTCAGCAATTTTAGGACTTGAAAGTCT
CCTACTTTCGATTTCGGGAGGCATATCCCTAGGAACTCTGGCGGCATTAAGAAAGAAAAAACAAGGACGCTATATCCTTC
TTTCTTCTATTTTACAGATTTCCATTCCAGCTTTTGTTTTAGCTACCATGCTGCAGTATATTTTCGCAGTAAAAATCCCC
ATTTTCCCCATTGCTTGCTGGGGAAATTTCTCCCACACGATTTTGCCGTCCCTGGCTTTAGCCATAGCGCCGATGGCCTT
CATCACACAATTAACTTTCTCATCCGTCTCTTCAGTCTTAAATAAAGACTATGTGTTGCTCGCCTATGCTAAAGGACTCT
CTCCAATAAAAGTGATACTTAAACACATTCTTCCCTACGCCGTGTTTCCTACCATTTCCTACGCTGCATTTCTTGTAACT
ACGGTGATGACAGGAACATTCGCTATAGAGAATATTTTCTGCATACCAGGTTTAGGAAAATGGTTCGTCTGTAGTATTAA
ACAGCGCGATTATCCAGTAACCCTGGGATTATCAGTATTTTATGGAGCTTTCTTTATGTTAGCTTCCCTACTTTCAGATC
TCATACAAGCCATAATAGATCCTCAGCTGCGCTATTCCTATAAAGAAGCTGATAAAAAAGTGAGTTTCTCTCAAGAAAGT
GAACATCTCTAA

Upstream 100 bases:

>100_bases
ATTGAAGCTACGATAAATCAGAGATATAATACTTGAGGTGAGGTAAGGTTCTAGATCATGAATCCTTATTGACTTATCAA
TGACATCAAAGGTGTAGATA

Downstream 100 bases:

>100_bases
CACAATTCATAGCATTTAGGTGAAGAATAAACAGAAACTAAAAGAAATAAATAAGGCTATTGAAAAACTTCATGGACATT
CCTTTAAACTCTTCTCAACC

Product: putative peptide ABC transport system permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MFRYIKKRLVFNLLSLWIILTLTFLVMKTIPGDPFNDESSNTLSQETLQILKSRYGLNKPLYQQYIHYLKSLVTLDFGNS
LVYKDRSVTSIIATAFPASAILGLESLLLSISGGISLGTLAALRKKKQGRYILLSSILQISIPAFVLATMLQYIFAVKIP
IFPIACWGNFSHTILPSLALAIAPMAFITQLTFSSVSSVLNKDYVLLAYAKGLSPIKVILKHILPYAVFPTISYAAFLVT
TVMTGTFAIENIFCIPGLGKWFVCSIKQRDYPVTLGLSVFYGAFFMLASLLSDLIQAIIDPQLRYSYKEADKKVSFSQES
EHL

Sequences:

>Translated_323_residues
MFRYIKKRLVFNLLSLWIILTLTFLVMKTIPGDPFNDESSNTLSQETLQILKSRYGLNKPLYQQYIHYLKSLVTLDFGNS
LVYKDRSVTSIIATAFPASAILGLESLLLSISGGISLGTLAALRKKKQGRYILLSSILQISIPAFVLATMLQYIFAVKIP
IFPIACWGNFSHTILPSLALAIAPMAFITQLTFSSVSSVLNKDYVLLAYAKGLSPIKVILKHILPYAVFPTISYAAFLVT
TVMTGTFAIENIFCIPGLGKWFVCSIKQRDYPVTLGLSVFYGAFFMLASLLSDLIQAIIDPQLRYSYKEADKKVSFSQES
EHL
>Mature_323_residues
MFRYIKKRLVFNLLSLWIILTLTFLVMKTIPGDPFNDESSNTLSQETLQILKSRYGLNKPLYQQYIHYLKSLVTLDFGNS
LVYKDRSVTSIIATAFPASAILGLESLLLSISGGISLGTLAALRKKKQGRYILLSSILQISIPAFVLATMLQYIFAVKIP
IFPIACWGNFSHTILPSLALAIAPMAFITQLTFSSVSSVLNKDYVLLAYAKGLSPIKVILKHILPYAVFPTISYAAFLVT
TVMTGTFAIENIFCIPGLGKWFVCSIKQRDYPVTLGLSVFYGAFFMLASLLSDLIQAIIDPQLRYSYKEADKKVSFSQES
EHL

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=36.3636363636364, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=33.0065359477124, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=30.2941176470588, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=29.8701298701299, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1788504, Length=367, Percent_Identity=27.2479564032698, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787761, Length=291, Percent_Identity=28.5223367697594, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=24.7272727272727, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36003; Mature: 36003

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRYIKKRLVFNLLSLWIILTLTFLVMKTIPGDPFNDESSNTLSQETLQILKSRYGLNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
LYQQYIHYLKSLVTLDFGNSLVYKDRSVTSIIATAFPASAILGLESLLLSISGGISLGTL
HHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AALRKKKQGRYILLSSILQISIPAFVLATMLQYIFAVKIPIFPIACWGNFSHTILPSLAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
AIAPMAFITQLTFSSVSSVLNKDYVLLAYAKGLSPIKVILKHILPYAVFPTISYAAFLVT
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMTGTFAIENIFCIPGLGKWFVCSIKQRDYPVTLGLSVFYGAFFMLASLLSDLIQAIID
HHHHHHHHHHHEEECCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
PQLRYSYKEADKKVSFSQESEHL
HHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFRYIKKRLVFNLLSLWIILTLTFLVMKTIPGDPFNDESSNTLSQETLQILKSRYGLNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
LYQQYIHYLKSLVTLDFGNSLVYKDRSVTSIIATAFPASAILGLESLLLSISGGISLGTL
HHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AALRKKKQGRYILLSSILQISIPAFVLATMLQYIFAVKIPIFPIACWGNFSHTILPSLAL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
AIAPMAFITQLTFSSVSSVLNKDYVLLAYAKGLSPIKVILKHILPYAVFPTISYAAFLVT
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMTGTFAIENIFCIPGLGKWFVCSIKQRDYPVTLGLSVFYGAFFMLASLLSDLIQAIID
HHHHHHHHHHHEEECCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
PQLRYSYKEADKKVSFSQESEHL
HHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]