Definition | Tropheryma whipplei TW08/27, complete genome. |
---|---|
Accession | NC_004551 |
Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is purA
Identifier: 28572942
GI number: 28572942
Start: 908787
End: 910076
Strand: Direct
Name: purA
Synonym: TW801
Alternate gene names: 28572942
Gene position: 908787-910076 (Clockwise)
Preceding gene: 28572941
Following gene: 28572943
Centisome position: 98.15
GC content: 46.67
Gene sequence:
>1290_bases TTGCCAGCAACAATTCTTATTGGTGCCCAGTGGGGGGATGAAGGCAAGGGAAAGGCCACAGACCTTCTTGCAAAAGATAT AGATTATGTCGTCAAATTCAACGGCGGTAATAATGCGGGTCACACCGTAGTTATAGGCGGTGATAAGTACGTTCTGCACC TTCTGCCTTCCGGGATACTCAATGAGAATGTCGTGCCGGTCATTGCAAATGGTGTTGTAATCAATCCGGAGGTGCTTTTT GATGAAATTGCTACTCTAAATTCACGAGGCGTAAACACGGACAAGCTTGTTATAAGCGCCAACGCTCATATTATTGCGCC CTTTCACAGAACTATAGATCTTGTGACGGAACGTTTCTTGGGCAAAAGACAGTTGGGAACAACAGGAAGAGGAATAGGCC CCACATATGCAGACAAAATAAACCGCATTGGTATACGGGTACAAGATTTATTTGATAAAAGCGTACTGCGACAAAAAATT GAGGGGTCTTTGAGTAATAAAAATCATATGCTCGTAAAAGTTTTTAACCGCAGATCTGTGTCTGTAACGGAAATGCTGGA TTATTTACTTAGTTTTGCTGAGCGTATGAGGCCGATGATCGCGGACACATCACTTTTGCTAAATAATGCTTTGGATTGCG GAAAACATGTCCTATTCGAGGGGGGTCAGGCGACTATGCTTGATGTCGATCATGGAAGTTACCCATTTGTCACTTCGTCC AATGCAACGGTCGGAGGGGCAATAACAGGGGCAGGGATTGGCCCAACTCGTGTGAACAAAGTTATCGGAGTGGCCAAATC GTACACAACTAGGGTAGGCGCAGGGCCATTTCCAACTGAATTGCATGACGAATATGGGGAGTGGCTACAAAAAAGAGGTT ATGAGGTAGGAGCAACTACAGGACGCAAGAGGCGGTGTGGGTGGTTTGACGGTGTGGTCGCCCGCTATGCGACTCGTATA AACGGGATAACGGACTACGTTCTGACAAAACTCGATGTTTTGACGGGCCTTGACAGAATACCTATCTGCGTCGGGTATAA AGTTGGAGACTCTGTCTTTCGGGAAATGCCTGTCTCGCAGAGTGATTTTCACCACGCAGTTCCCATATACGAGGATCTGC CCGGATGGCAGTGCAATATTTCCGAATGCGAAAGTTTTGACAGTCTTCCTCCGGAAGCAAGGGGCTATGTCTTGGCCCTG GAGGATCTTATAAAGGCACGAATATCAGTCATTGGAACAGGTCCAGAGCGGGAAAATATAATCATTAGGCACCCGCTGGG CATCTTCTAG
Upstream 100 bases:
>100_bases GGCACTGGGGGCACCAAAAATAGCTCAGGTGCTGGGTGAAAATGCTTGCCTGCAAAACTATGGCAAGCTTTCGGTTGCTC AAGCCTGAGGAGGAATAGAT
Downstream 100 bases:
>100_bases ATAAGCGCATCGAGAGTGTTAGGATCTATCCAGGGCAATACCGCCGATGTTCTGCCCAGGATAGTGTGCGTGGGACAGGT GGCCTTAGCTGCTCGGCGGG
Product: adenylosuccinate synthetase
Products: NA
Alternate protein names: AMPSase; AdSS; IMP--aspartate ligase
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MPATILIGAQWGDEGKGKATDLLAKDIDYVVKFNGGNNAGHTVVIGGDKYVLHLLPSGILNENVVPVIANGVVINPEVLF DEIATLNSRGVNTDKLVISANAHIIAPFHRTIDLVTERFLGKRQLGTTGRGIGPTYADKINRIGIRVQDLFDKSVLRQKI EGSLSNKNHMLVKVFNRRSVSVTEMLDYLLSFAERMRPMIADTSLLLNNALDCGKHVLFEGGQATMLDVDHGSYPFVTSS NATVGGAITGAGIGPTRVNKVIGVAKSYTTRVGAGPFPTELHDEYGEWLQKRGYEVGATTGRKRRCGWFDGVVARYATRI NGITDYVLTKLDVLTGLDRIPICVGYKVGDSVFREMPVSQSDFHHAVPIYEDLPGWQCNISECESFDSLPPEARGYVLAL EDLIKARISVIGTGPERENIIIRHPLGIF
Sequences:
>Translated_429_residues MPATILIGAQWGDEGKGKATDLLAKDIDYVVKFNGGNNAGHTVVIGGDKYVLHLLPSGILNENVVPVIANGVVINPEVLF DEIATLNSRGVNTDKLVISANAHIIAPFHRTIDLVTERFLGKRQLGTTGRGIGPTYADKINRIGIRVQDLFDKSVLRQKI EGSLSNKNHMLVKVFNRRSVSVTEMLDYLLSFAERMRPMIADTSLLLNNALDCGKHVLFEGGQATMLDVDHGSYPFVTSS NATVGGAITGAGIGPTRVNKVIGVAKSYTTRVGAGPFPTELHDEYGEWLQKRGYEVGATTGRKRRCGWFDGVVARYATRI NGITDYVLTKLDVLTGLDRIPICVGYKVGDSVFREMPVSQSDFHHAVPIYEDLPGWQCNISECESFDSLPPEARGYVLAL EDLIKARISVIGTGPERENIIIRHPLGIF >Mature_428_residues PATILIGAQWGDEGKGKATDLLAKDIDYVVKFNGGNNAGHTVVIGGDKYVLHLLPSGILNENVVPVIANGVVINPEVLFD EIATLNSRGVNTDKLVISANAHIIAPFHRTIDLVTERFLGKRQLGTTGRGIGPTYADKINRIGIRVQDLFDKSVLRQKIE GSLSNKNHMLVKVFNRRSVSVTEMLDYLLSFAERMRPMIADTSLLLNNALDCGKHVLFEGGQATMLDVDHGSYPFVTSSN ATVGGAITGAGIGPTRVNKVIGVAKSYTTRVGAGPFPTELHDEYGEWLQKRGYEVGATTGRKRRCGWFDGVVARYATRIN GITDYVLTKLDVLTGLDRIPICVGYKVGDSVFREMPVSQSDFHHAVPIYEDLPGWQCNISECESFDSLPPEARGYVLALE DLIKARISVIGTGPERENIIIRHPLGIF
Specific function: Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP
COG id: COG0104
COG function: function code F; Adenylosuccinate synthase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenylosuccinate synthetase family
Homologues:
Organism=Homo sapiens, GI22748717, Length=427, Percent_Identity=43.7939110070258, Blast_Score=345, Evalue=4e-95, Organism=Homo sapiens, GI34577063, Length=429, Percent_Identity=44.5221445221445, Blast_Score=341, Evalue=9e-94, Organism=Homo sapiens, GI40316944, Length=396, Percent_Identity=42.6767676767677, Blast_Score=305, Evalue=6e-83, Organism=Escherichia coli, GI1790620, Length=427, Percent_Identity=46.6042154566745, Blast_Score=400, Evalue=1e-112, Organism=Caenorhabditis elegans, GI25146553, Length=434, Percent_Identity=44.0092165898618, Blast_Score=328, Evalue=4e-90, Organism=Caenorhabditis elegans, GI25146555, Length=434, Percent_Identity=44.0092165898618, Blast_Score=328, Evalue=5e-90, Organism=Saccharomyces cerevisiae, GI6324109, Length=425, Percent_Identity=40.2352941176471, Blast_Score=330, Evalue=2e-91, Organism=Drosophila melanogaster, GI21356033, Length=424, Percent_Identity=44.1037735849057, Blast_Score=353, Evalue=1e-97,
Paralogues:
None
Copy number: 940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): PURA_TROW8 (Q83H67)
Other databases:
- EMBL: BX251412 - RefSeq: NP_789722.1 - ProteinModelPortal: Q83H67 - SMR: Q83H67 - STRING: Q83H67 - GeneID: 1065001 - GenomeReviews: BX072543_GR - KEGG: tws:TW801 - eggNOG: COG0104 - HOGENOM: HBG658237 - OMA: DYVVRYQ - PhylomeDB: Q83H67 - ProtClustDB: PRK01117 - BioCyc: TWHI218496:TW0767-MONOMER - GO: GO:0005737 - HAMAP: MF_00011 - InterPro: IPR018220 - InterPro: IPR001114 - PANTHER: PTHR11846 - SMART: SM00788 - TIGRFAMs: TIGR00184
Pfam domain/function: PF00709 Adenylsucc_synt
EC number: =6.3.4.4
Molecular weight: Translated: 46844; Mature: 46713
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: PS01266 ADENYLOSUCCIN_SYN_1; PS00513 ADENYLOSUCCIN_SYN_2
Important sites: ACT_SITE 13-13 ACT_SITE 41-41 BINDING 128-128 BINDING 142-142 BINDING 223-223 BINDING 238-238 BINDING 302-302 BINDING 304-304
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATILIGAQWGDEGKGKATDLLAKDIDYVVKFNGGNNAGHTVVIGGDKYVLHLLPSGIL CCCEEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEECCCEEEEEECCCCCC NENVVPVIANGVVINPEVLFDEIATLNSRGVNTDKLVISANAHIIAPFHRTIDLVTERFL CCCCCEEEECCEEECHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHH GKRQLGTTGRGIGPTYADKINRIGIRVQDLFDKSVLRQKIEGSLSNKNHMLVKVFNRRSV CCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC SVTEMLDYLLSFAERMRPMIADTSLLLNNALDCGKHVLFEGGQATMLDVDHGSYPFVTSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCEEECC NATVGGAITGAGIGPTRVNKVIGVAKSYTTRVGAGPFPTELHDEYGEWLQKRGYEVGATT CCEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCC GRKRRCGWFDGVVARYATRINGITDYVLTKLDVLTGLDRIPICVGYKVGDSVFREMPVSQ CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCC SDFHHAVPIYEDLPGWQCNISECESFDSLPPEARGYVLALEDLIKARISVIGTGPERENI CCCCCCCCHHHCCCCCEECHHHHHHCCCCCCCCCCEEEEHHHHHHHHHEEEECCCCCCCE IIRHPLGIF EEECCCCCC >Mature Secondary Structure PATILIGAQWGDEGKGKATDLLAKDIDYVVKFNGGNNAGHTVVIGGDKYVLHLLPSGIL CCEEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEECCCEEEEEECCCCCC NENVVPVIANGVVINPEVLFDEIATLNSRGVNTDKLVISANAHIIAPFHRTIDLVTERFL CCCCCEEEECCEEECHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHH GKRQLGTTGRGIGPTYADKINRIGIRVQDLFDKSVLRQKIEGSLSNKNHMLVKVFNRRSV CCHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC SVTEMLDYLLSFAERMRPMIADTSLLLNNALDCGKHVLFEGGQATMLDVDHGSYPFVTSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCEEECC NATVGGAITGAGIGPTRVNKVIGVAKSYTTRVGAGPFPTELHDEYGEWLQKRGYEVGATT CCEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCC GRKRRCGWFDGVVARYATRINGITDYVLTKLDVLTGLDRIPICVGYKVGDSVFREMPVSQ CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCCC SDFHHAVPIYEDLPGWQCNISECESFDSLPPEARGYVLALEDLIKARISVIGTGPERENI CCCCCCCCHHHCCCCCEECHHHHHHCCCCCCCCCCEEEEHHHHHHHHHEEEECCCCCCCE IIRHPLGIF EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12606174