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The map label for this gene is yedQ [H]

Identifier: 23501935

GI number: 23501935

Start: 1025909

End: 1026703

Strand: Reverse

Name: yedQ [H]

Synonym: BR1057

Alternate gene names: 23501935

Gene position: 1026703-1025909 (Counterclockwise)

Preceding gene: 23501936

Following gene: 23501928

Centisome position: 48.71

GC content: 56.35

Gene sequence:

>795_bases
ATGAAGACGGCTCTATGGAAGGCGGCGTTGTTAACGCTGTCCGTTGTCCTGTTTTGTGTTGGGGCGACGTCGATAACTGC
TTTTTGGTCCGGTGAAACGCCGGGGCTGATGGCAATAAGTCTGAGCCTGGGGTTTCTCCTTGTGATGATATTCCCGTTCT
CGGCATTCATTTTTCTTCGCTATGATAAACTGAAGGAAGCCTACGCCCAGCTTGAGAAGTCTCATGTCGAGTTGCAGGCG
CGGGCGCGTATCGACCATATGACGGGACTTCTCAACCGCGAGGCTCTCTTCGAGGCGATGAAGATCAGCCGTTCGCGTAT
TGAAACCGGCACATTGCTGGTCATTGATGCCGATCATTTCAAGGCGATCAACGATAGTTTCGGCCACGGCGTCGGCGACC
GGGCGTTGAAACTGATTGCCTTCGCCTTGCAAAATGTAACGCGGAAGGGGGATCTGGTCGGGCGCATCGGTGGGGAAGAA
TTCTGCGTATTCCTGCCCGGTGCAAGCGGTGAGACGGGCGTTCGTGTTGCCCAGCGCATCCGCGCGGAGGTGGAAAATAC
GCCGTTCCATACGACCGAATATCAGGTCTATCCACTCACCATCTCAATTGGGGTGGCTTCCGCACCCAAAAGCGAAACCA
ATTCGCAGGTGCTGAGCCGCGCCGACCGCTGCCTCTATCTGGCGAAGCAGCGCGGGCGCAATTGCGTGGTGTTCGATGAG
GAAAGCGCCCCTATAACGGGTGCTTCAGTGGTTTCGATCAATAGCGGGCGTGAAGCGGCGCGCGGCCAAGCATAA

Upstream 100 bases:

>100_bases
GGGTGATCCTTCTATAAGCGCCTGTCAAATGGTGCCTGCTCAGAGGGCTTGAGAAGCAGGCACACAAGACGTCCTCACTC
GGGGTTGGGAGAGCGTGGGA

Downstream 100 bases:

>100_bases
TCTTGATTGTCGTCGTTTCACACTTTTCGGGATGCGCTCTAAAGCCACTGCTCGACTTCCTCTTCCGACCAGGCAACCGG
AACAAATCCCATTTTCTGAT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKTALWKAALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQLEKSHVELQA
RARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEE
FCVFLPGASGETGVRVAQRIRAEVENTPFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDE
ESAPITGASVVSINSGREAARGQA

Sequences:

>Translated_264_residues
MKTALWKAALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQLEKSHVELQA
RARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEE
FCVFLPGASGETGVRVAQRIRAEVENTPFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDE
ESAPITGASVVSINSGREAARGQA
>Mature_264_residues
MKTALWKAALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQLEKSHVELQA
RARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEE
FCVFLPGASGETGVRVAQRIRAEVENTPFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDE
ESAPITGASVVSINSGREAARGQA

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=205, Percent_Identity=36.5853658536585, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=37.1951219512195, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI145693134, Length=209, Percent_Identity=35.8851674641148, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=38.1818181818182, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786584, Length=203, Percent_Identity=34.4827586206897, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=157, Percent_Identity=35.6687898089172, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=35.7142857142857, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=31.2849162011173, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=212, Percent_Identity=25.9433962264151, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=31.7919075144509, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=31.9526627218935, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=32.2222222222222, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=30.9677419354839, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 28776; Mature: 28776

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALWKAALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLR
CCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
YDKLKEAYAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
KAINDSFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHH
RAEVENTPFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDE
HHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
ESAPITGASVVSINSGREAARGQA
CCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKTALWKAALLTLSVVLFCVGATSITAFWSGETPGLMAISLSLGFLLVMIFPFSAFIFLR
CCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
YDKLKEAYAQLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
KAINDSFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHH
RAEVENTPFHTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVVFDE
HHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
ESAPITGASVVSINSGREAARGQA
CCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]