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The map label for this gene is araQ [H]

Identifier: 23100877

GI number: 23100877

Start: 3559795

End: 3560604

Strand: Reverse

Name: araQ [H]

Synonym: OB3422

Alternate gene names: 23100877

Gene position: 3560604-3559795 (Counterclockwise)

Preceding gene: 23100878

Following gene: 23100876

Centisome position: 98.07

GC content: 34.2

Gene sequence:

>810_bases
GTGCGATCTATTGGTAAACACAGTGTTTTAATTATAGGTTCATTCCTTATGATAATTCCTTTTTTATGGATGGTGTTAAC
TTCCTTTAAAACATACGGAGAATCAATGCAAGTACCGCCTACTATATTGCCTAGTGAATGGAACTTTAATAATTATGTCA
GTGTATTTCAAAGTGTAGACTTTCTTCAGTATTATATCAATACACTTATTGTCACTGTAGGTAGAACATTAGGACAACTA
TTTTTATGTTCGTTAGCCGCTTTCGCATTCGCTAGATTAGAATTTCCGGGAAAAAATATAATATTTTTATTAATTTTATC
TGTTCTGATGGTTCCCTTACAGGTTATTCTTATTCCTAATTTCGGAATAATTACTCAATTTGGGTGGGTTGATACTTTTT
ATGCATTAATTATACCGGGGGTATTTAGCGCATTTGGGGTGTTTCTGTTAAGACAATTTTTTATGGGGATTCCTAAAGAA
CTTGATGATGCAGCGAAAATTGATGGATGTTCTTACTTCGGTATTTATTGGAGGATTATTTTACCAAATGCAACTCCGGC
ATTAACAGCGTTAGGGATATTTACGATTTTAGCTGCATGGAATGACTTTTTGTGGCCATTGGTAATGACAAACTCTGAGG
GTATGAGAGTATTATCCGTTGGCATATCAAATTTTCAAGGTCAATATTCTACTGACTATCCCCTATTAATGGCTGGTGCA
GTATTATCTACCATTCCAATGTTGCTGATGTTTATATTCTTACAAAAATACTTATTAGCTGGAATTGCATTAGGTGGGGT
CAGAAGATAG

Upstream 100 bases:

>100_bases
CGTTGATTTTATTCTTAACCATCCTTTTAGTAACCATTGTACAATTTATCTTTCAAAAGAAGTGGGTACATTATGATGCT
TGATAAAGAGGTGAATAGAA

Downstream 100 bases:

>100_bases
TCTATAAGTTTAATTAAATGGAGGTTTTAGAAAATGCTTAATGTATTAGTTATCGGTTCGGGTACGATGGGGGGAACACA
TGCTAATGCTTATTCCAACT

Product: sugar binding-protein dependent transporter system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVDFLQYYINTLIVTVGRTLGQL
FLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPNFGIITQFGWVDTFYALIIPGVFSAFGVFLLRQFFMGIPKE
LDDAAKIDGCSYFGIYWRIILPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAGA
VLSTIPMLLMFIFLQKYLLAGIALGGVRR

Sequences:

>Translated_269_residues
MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVDFLQYYINTLIVTVGRTLGQL
FLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPNFGIITQFGWVDTFYALIIPGVFSAFGVFLLRQFFMGIPKE
LDDAAKIDGCSYFGIYWRIILPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAGA
VLSTIPMLLMFIFLQKYLLAGIALGGVRR
>Mature_269_residues
MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVDFLQYYINTLIVTVGRTLGQL
FLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPNFGIITQFGWVDTFYALIIPGVFSAFGVFLLRQFFMGIPKE
LDDAAKIDGCSYFGIYWRIILPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAGA
VLSTIPMLLMFIFLQKYLLAGIALGGVRR

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=30.8823529411765, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789860, Length=268, Percent_Identity=27.6119402985075, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790464, Length=209, Percent_Identity=25.3588516746411, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30139; Mature: 30139

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FLQYYINTLIVTVGRTLGQLFLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
FGIITQFGWVDTFYALIIPGVFSAFGVFLLRQFFMGIPKELDDAAKIDGCSYFGIYWRII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEHEEEEEEE
LPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAGA
ECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECHHHCCCCCCCCCHHHHHHH
VLSTIPMLLMFIFLQKYLLAGIALGGVRR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FLQYYINTLIVTVGRTLGQLFLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
FGIITQFGWVDTFYALIIPGVFSAFGVFLLRQFFMGIPKELDDAAKIDGCSYFGIYWRII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEHEEEEEEE
LPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAGA
ECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECHHHCCCCCCCCCHHHHHHH
VLSTIPMLLMFIFLQKYLLAGIALGGVRR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]