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The map label for this gene is rbsD

Identifier: 23100030

GI number: 23100030

Start: 2634057

End: 2634452

Strand: Reverse

Name: rbsD

Synonym: OB2575

Alternate gene names: 23100030

Gene position: 2634452-2634057 (Counterclockwise)

Preceding gene: 23100031

Following gene: 23100029

Centisome position: 72.56

GC content: 36.36

Gene sequence:

>396_bases
ATGAAGAAAAAAGGTATGTTAAACAGCGAAATATCAAAAGTTTTATCAGATTTGGGACATACCGATCAAATTGTTATTGC
CGATGCAGGCTTACCTGTTCCAGAAGGGGTTACAAAGATTGATGTAGCTTTGACCCCTGGTACTCCATCTTTTCTCGACG
TACTAAAGGCAGTAAAAGCGGATATGGTCATTGAAGGAGTAACATTAGCTCGTGAGATAAAAGTAGATAATACAGAAAAT
CACAAGCAAATACAGGAAGTGATCAACGATATACCAATAACGTATGTAACCCATGAACAATTTAAAGCGTTAAGTAAACA
AGCAAAAGCAATTATACGTACGGGAGAAATAACTCCTTACGCAAATTGCATATTACAATCGGGTGTTTTTTTCTGA

Upstream 100 bases:

>100_bases
ATGCAATTCGTTTTGCGAATAAGGCTGCATCGATATCAATTACAAAATTTGGTGCACAAGGCGGGATGCCAACTCGAACA
GAGATGGAGGAATAAAGTAT

Downstream 100 bases:

>100_bases
AAAAGGAGTGATTAATAATGAAGATTGTCATGGAAAATATTCATAAATCTTTTGGCTCCAATAACGTGCTTGAAGGTGTA
GATTTTTCACTTGAACCAGG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKKGMLNSEISKVLSDLGHTDQIVIADAGLPVPEGVTKIDVALTPGTPSFLDVLKAVKADMVIEGVTLAREIKVDNTEN
HKQIQEVINDIPITYVTHEQFKALSKQAKAIIRTGEITPYANCILQSGVFF

Sequences:

>Translated_131_residues
MKKKGMLNSEISKVLSDLGHTDQIVIADAGLPVPEGVTKIDVALTPGTPSFLDVLKAVKADMVIEGVTLAREIKVDNTEN
HKQIQEVINDIPITYVTHEQFKALSKQAKAIIRTGEITPYANCILQSGVFF
>Mature_131_residues
MKKKGMLNSEISKVLSDLGHTDQIVIADAGLPVPEGVTKIDVALTPGTPSFLDVLKAVKADMVIEGVTLAREIKVDNTEN
HKQIQEVINDIPITYVTHEQFKALSKQAKAIIRTGEITPYANCILQSGVFF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=49.6402877697842, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_OCEIH (Q8ENB2)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693496.1
- HSSP:   P36946
- ProteinModelPortal:   Q8ENB2
- GeneID:   1015272
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2575
- NMPDR:   fig|221109.1.peg.2574
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   OIHE221109:OB2575-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14273; Mature: 14273

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKGMLNSEISKVLSDLGHTDQIVIADAGLPVPEGVTKIDVALTPGTPSFLDVLKAVKA
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
DMVIEGVTLAREIKVDNTENHKQIQEVINDIPITYVTHEQFKALSKQAKAIIRTGEITPY
HHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCHH
ANCILQSGVFF
HHHHHHCCCCC
>Mature Secondary Structure
MKKKGMLNSEISKVLSDLGHTDQIVIADAGLPVPEGVTKIDVALTPGTPSFLDVLKAVKA
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
DMVIEGVTLAREIKVDNTENHKQIQEVINDIPITYVTHEQFKALSKQAKAIIRTGEITPY
HHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCHH
ANCILQSGVFF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376