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The map label for this gene is sdhC [H]

Identifier: 23099569

GI number: 23099569

Start: 2147652

End: 2148272

Strand: Reverse

Name: sdhC [H]

Synonym: OB2114

Alternate gene names: 23099569

Gene position: 2148272-2147652 (Counterclockwise)

Preceding gene: 23099571

Following gene: 23099568

Centisome position: 59.17

GC content: 35.59

Gene sequence:

>621_bases
ATGGCAGAGCATCGTGAGTTTTTCTACAGAAGACTGCATTCATTACTAGGGGTTGTTCCAATCGGGATCTTCTTAGTGCA
GCATTTACTTATTAATCATTTTGCTGTGTATGGGGAAGAAAGTTTCAATACAGCTGCTGGGTTTATGAAGAACCTACCAT
TTGTATTACTGTTAGAAATTTTTGTGATTTATTTACCGATTTTGTTCCATGCGATTTTAGGGGTTTATATTGTATTTGTC
GCAAAACAAAATACACGCAAATATGGATTTTTCCGAAACTGGATGTTTAGATTTCAACGTATAACTGGAATAATTCTTGT
AGTATTTATTGCGTGGCACGTATTTGAAACAAGAGTTCAGATAGGCTTAGGAAATGCAGAACTAGATTATAGCCTCATGG
AAGGTATTTTAACGAATCCATTCATGTTTTGGTTCTATGTTGTAGGTGTTATTGCTGCAGTATTCCATTTTGCAAATGGT
CTTTGGAGCTTCCTTGTTTCATGGGGAATTACACAAACTCCAAAATCACAGCGTATCTCAACGTATGCGTGTTTAGGCGT
ATTCTTAGCAGTGAGCTATCTTGGAATTAGATCATTAATTAAATTTGCTTATGGTGTTTAA

Upstream 100 bases:

>100_bases
TGTACTACTTAGATAAGGCACCGTTTTCTGACAATAAAGCGCTTTATTATTTAGTGGTATACATAATTATTGAGTGATCA
ATTGACTAAGGGGGGTAAAC

Downstream 100 bases:

>100_bases
TTGAAAGAGAAGGAAGGAGTGAGTGAACAATATGAGTAATCGTAAAGTAGCAGTGGTTGGTGGTGGCTTAGCAGGACTTA
TGGCTACAATCAAAGCCGCT

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAEHREFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEESFNTAAGFMKNLPFVLLLEIFVIYLPILFHAILGVYIVFV
AKQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQIGLGNAELDYSLMEGILTNPFMFWFYVVGVIAAVFHFANG
LWSFLVSWGITQTPKSQRISTYACLGVFLAVSYLGIRSLIKFAYGV

Sequences:

>Translated_206_residues
MAEHREFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEESFNTAAGFMKNLPFVLLLEIFVIYLPILFHAILGVYIVFV
AKQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQIGLGNAELDYSLMEGILTNPFMFWFYVVGVIAAVFHFANG
LWSFLVSWGITQTPKSQRISTYACLGVFLAVSYLGIRSLIKFAYGV
>Mature_205_residues
AEHREFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEESFNTAAGFMKNLPFVLLLEIFVIYLPILFHAILGVYIVFVA
KQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQIGLGNAELDYSLMEGILTNPFMFWFYVVGVIAAVFHFANGL
WSFLVSWGITQTPKSQRISTYACLGVFLAVSYLGIRSLIKFAYGV

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23799; Mature: 23667

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHREFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEESFNTAAGFMKNLPFVLLLEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
FVIYLPILFHAILGVYIVFVAKQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQ
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLGNAELDYSLMEGILTNPFMFWFYVVGVIAAVFHFANGLWSFLVSWGITQTPKSQRIS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
TYACLGVFLAVSYLGIRSLIKFAYGV
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEHREFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEESFNTAAGFMKNLPFVLLLEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
FVIYLPILFHAILGVYIVFVAKQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQ
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLGNAELDYSLMEGILTNPFMFWFYVVGVIAAVFHFANGLWSFLVSWGITQTPKSQRIS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
TYACLGVFLAVSYLGIRSLIKFAYGV
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]