| Definition | Oceanobacillus iheyensis HTE831, complete genome. |
|---|---|
| Accession | NC_004193 |
| Length | 3,630,528 |
Click here to switch to the map view.
The map label for this gene is xylB [H]
Identifier: 23099542
GI number: 23099542
Start: 2117223
End: 2118797
Strand: Reverse
Name: xylB [H]
Synonym: OB2087
Alternate gene names: 23099542
Gene position: 2118797-2117223 (Counterclockwise)
Preceding gene: 23099543
Following gene: 23099541
Centisome position: 58.36
GC content: 37.65
Gene sequence:
>1575_bases ATGAATTTGAAAACATTTAAAAACCCAATCATCCCTGGCTTTTACCCTGATCCATCTATCTGTCGAGTAGATGAGGATTA TTATTTAGTAACTTCAACATTTGAATATTTCCCAGGAGTTCCAATTTTTCATAGTAGAGATTTAGTCAATTGGAACCAAA TTGGTCATGTGCTAGACCGGCCATCTCAACTGAATCTGAATGGTATTCCTTGTTCAAGAGGAATTTACGCGCCTACGATT AGATATCATAATGGGATCTTTTATATGATTACTACCTTTGTTGAAAGTAGAACGGGATTGAGACGTGATTTTTATGTTAC TGCAGAAGATCCAGGAGGTCCTTGGAGTGACCCAAACTGGTTGGGACCAACGCCAGGTATTGATCCTTCATTGTTTTTTG ATGACAATGGAAAGGTTTATTATACCGCAAACCGTCAACCACCAGATGGACAGGAATATCCGAAGCATATGGAAATCTAT TTACAGGAATTAGACTTAGAAAGCAAACAATTAATAGGTGATAAGTATAGCTTGTGGGATGGTGCGTTGAAAAATGCTCA TGCACAAGAAGCTCCCCACCTATATAAAGTGAATGGGTGGTACTATCTAATGATTGCAGAAGGTGGTACAGGATTTACGC ATGCAGTAACCATAGCTAGAAGCAGATCCTTACTAGGACCATATGAATCAGCAAAAACAAACCCAATTTTGACTCATCGA CATTTAGGAAGAGAGTATCCAATAAGTAACATAGGGCATGCAGACATTATTGAAACGCATAAAGGAGAGTGGTGGATGGT ATGTCTTGGATCACGTCCTTATGGAGGGCATTACCGAAATTTAGGAAGGGAAACTTTTCTAGTCCCTATGGTGTGGGAGA ACGATTGGCCTGTTATTAACCCTGGTAAAGGGATCGTTGAATTGGAATCACCTTTTCCTGATTTGGATGAAGTAAAATGG CCGGAAGTTTCAGATAGAGATGATTTTAATTCGACAGAGCTTTCATTACAGTGGAATTTCGTACGGACACCACATGAAAC ATTTTGGTCTTTGAACGAACGTCCAGGCTACTTAAGACTAAAGTTGAAACCAGAAACGATTATAGATCGAGTTAATCCAA GCTTTATCGGGAGGCGTCAACAACATAAAAATTTTGTTGCTACTACATTAATGGAGTTTGTTCCTAAGAAAAGTGGAGAA GTAGCTGGAATCGTTTTACTACAAAACAATGATTTTCAATTTCGAATGGAACTTCTACTGGATGGTGCATCTACTATTGT TCGACTAATAAGAAGATATGATGGGATAGATCAGGTGATTTCTCAGGAACAAACGAGTGAGAATAAATTATATTTAAAAG TAGAGGCAAAAGAGCAAGATTATTGTTTTTATTATGGGAATTCACTCAATAATTTTGAACTACTTGCAAATCAAGATGGC AAATTACTAAGTACGGATATAGCTGGAGGATTTGTAGGGACCTATATAGGCATGTATGCCAGCAGTAATGGGAAGGAGAG TACGAATAAAGCTGATTTTGATTGGTTTGAGTATAAAGAAATCTTACAAAAATAA
Upstream 100 bases:
>100_bases TTAGATCATTTAATTAGGAAGCGTAAACACCCAAATACTCCTATAGTTACTGTCAATGACGTAACTAATATACGGACTAA TCAATCTAGTAGGGAGGTAA
Downstream 100 bases:
>100_bases GTGTAATAGGAGGAGGTTTTTATGAATAAAATTACTAATTTGAACGAGGAGGATCCATTAACATGGGCAGAAAAAGCATG TAAAAGCATGATGAATCAAT
Product: arabinofuranosidase
Products: NA
Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]
Number of amino acids: Translated: 524; Mature: 524
Protein sequence:
>524_residues MNLKTFKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDRPSQLNLNGIPCSRGIYAPTI RYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNWLGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPKHMEIY LQELDLESKQLIGDKYSLWDGALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYESAKTNPILTHR HLGREYPISNIGHADIIETHKGEWWMVCLGSRPYGGHYRNLGRETFLVPMVWENDWPVINPGKGIVELESPFPDLDEVKW PEVSDRDDFNSTELSLQWNFVRTPHETFWSLNERPGYLRLKLKPETIIDRVNPSFIGRRQQHKNFVATTLMEFVPKKSGE VAGIVLLQNNDFQFRMELLLDGASTIVRLIRRYDGIDQVISQEQTSENKLYLKVEAKEQDYCFYYGNSLNNFELLANQDG KLLSTDIAGGFVGTYIGMYASSNGKESTNKADFDWFEYKEILQK
Sequences:
>Translated_524_residues MNLKTFKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDRPSQLNLNGIPCSRGIYAPTI RYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNWLGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPKHMEIY LQELDLESKQLIGDKYSLWDGALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYESAKTNPILTHR HLGREYPISNIGHADIIETHKGEWWMVCLGSRPYGGHYRNLGRETFLVPMVWENDWPVINPGKGIVELESPFPDLDEVKW PEVSDRDDFNSTELSLQWNFVRTPHETFWSLNERPGYLRLKLKPETIIDRVNPSFIGRRQQHKNFVATTLMEFVPKKSGE VAGIVLLQNNDFQFRMELLLDGASTIVRLIRRYDGIDQVISQEQTSENKLYLKVEAKEQDYCFYYGNSLNNFELLANQDG KLLSTDIAGGFVGTYIGMYASSNGKESTNKADFDWFEYKEILQK >Mature_524_residues MNLKTFKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDRPSQLNLNGIPCSRGIYAPTI RYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNWLGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPKHMEIY LQELDLESKQLIGDKYSLWDGALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYESAKTNPILTHR HLGREYPISNIGHADIIETHKGEWWMVCLGSRPYGGHYRNLGRETFLVPMVWENDWPVINPGKGIVELESPFPDLDEVKW PEVSDRDDFNSTELSLQWNFVRTPHETFWSLNERPGYLRLKLKPETIIDRVNPSFIGRRQQHKNFVATTLMEFVPKKSGE VAGIVLLQNNDFQFRMELLLDGASTIVRLIRRYDGIDQVISQEQTSENKLYLKVEAKEQDYCFYYGNSLNNFELLANQDG KLLSTDIAGGFVGTYIGMYASSNGKESTNKADFDWFEYKEILQK
Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]
COG id: COG3507
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 43 family [H]
Homologues:
Organism=Escherichia coli, GI1786467, Length=548, Percent_Identity=35.2189781021898, Blast_Score=280, Evalue=2e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR006710 [H]
Pfam domain/function: PF04616 Glyco_hydro_43 [H]
EC number: =3.2.1.37; =3.2.1.55 [H]
Molecular weight: Translated: 60271; Mature: 60271
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKTFKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDR CCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHCC PSQLNLNGIPCSRGIYAPTIRYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNW CCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHCCCCCEEEEEEECCCCCCCCCCCC LGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPKHMEIYLQELDLESKQLIGDKYSLWD CCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHH GALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYESAKTNPILTHR HHHHCCCHHCCCCEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEHH HLGREYPISNIGHADIIETHKGEWWMVCLGSRPYGGHYRNLGRETFLVPMVWENDWPVIN HCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHCCCCEEEEEEEECCCCCEEC PGKGIVELESPFPDLDEVKWPEVSDRDDFNSTELSLQWNFVRTPHETFWSLNERPGYLRL CCCCEEEECCCCCCHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHCCCCCCCEEEE KLKPETIIDRVNPSFIGRRQQHKNFVATTLMEFVPKKSGEVAGIVLLQNNDFQFRMELLL EECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEC DGASTIVRLIRRYDGIDQVISQEQTSENKLYLKVEAKEQDYCFYYGNSLNNFELLANQDG CCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCC KLLSTDIAGGFVGTYIGMYASSNGKESTNKADFDWFEYKEILQK CEEEEHHCCHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MNLKTFKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDR CCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHCC PSQLNLNGIPCSRGIYAPTIRYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNW CCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHCCCCCEEEEEEECCCCCCCCCCCC LGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPKHMEIYLQELDLESKQLIGDKYSLWD CCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHH GALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYESAKTNPILTHR HHHHCCCHHCCCCEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEHH HLGREYPISNIGHADIIETHKGEWWMVCLGSRPYGGHYRNLGRETFLVPMVWENDWPVIN HCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHCCCCEEEEEEEECCCCCEEC PGKGIVELESPFPDLDEVKWPEVSDRDDFNSTELSLQWNFVRTPHETFWSLNERPGYLRL CCCCEEEECCCCCCHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHCCCCCCCEEEE KLKPETIIDRVNPSFIGRRQQHKNFVATTLMEFVPKKSGEVAGIVLLQNNDFQFRMELLL EECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEC DGASTIVRLIRRYDGIDQVISQEQTSENKLYLKVEAKEQDYCFYYGNSLNNFELLANQDG CCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCC KLLSTDIAGGFVGTYIGMYASSNGKESTNKADFDWFEYKEILQK CEEEEHHCCHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1905520 [H]