| Definition | Oceanobacillus iheyensis HTE831, complete genome. |
|---|---|
| Accession | NC_004193 |
| Length | 3,630,528 |
Click here to switch to the map view.
The map label for this gene is recJ [H]
Identifier: 23099481
GI number: 23099481
Start: 2052597
End: 2054912
Strand: Reverse
Name: recJ [H]
Synonym: OB2026
Alternate gene names: 23099481
Gene position: 2054912-2052597 (Counterclockwise)
Preceding gene: 23099482
Following gene: 23099480
Centisome position: 56.6
GC content: 35.02
Gene sequence:
>2316_bases ATGTTAGATAGTAAAATGAAATGGAGATATAATCAGGTAGAAGATCATAACAGTTCTTTACTAAAAGACACTAATCTATC TCCTTTATTGAAGCAGTTGTTTATTCAACGAGGAATAACAACAAATGAAGAGGTGCAACGCTTTCTATCTCCGCAAATAG ATGATCTACATCACCCATTTCTTTTAAAGGACATGGAAAAAGCGGTTCAACGAATACATAAAGCAATACAGAATGAAGAA AAGATTCTAGTATTTGGTGATTATGATGCAGATGGTGTAAGCTCAACAGCAGTAATGTTAAAAGCATTAACTGAATTAGG GGCTACATGTGACTTCTATATTCCTAATCGATTTACGGAGGGCTATGGACCTAATGAAGCTGCATTTCGTAATGCATCTG AACAAGGATACAAAGTAATTATTACTGTAGATACTGGTATAACATCCGTTCATGAAGCAAATATAGCTAATGAACTAGGT ATGGATTTGATTATTACTGATCATCATGAACCTCAAACCAATATACCTGAAAGCTTCGCAATCATTCATCCAAAGTGTTC TCCCGAATACCCGTTTAATGAACTAGCTGGTGTTGGAGTAGCTTTTAAATTTGCAGAAGCTCTCCTGGGGTATTTTCCGT CTCAGTTTTTATCATACACCGCAATTGGGACTATTGCCGATTTAGTACCGTTATTTGATGAGAATAGAGTATTGGCTTCT TACGGGTTAAAGGAACTACGAGCGACAACGGATGTTGGTTTAAAAGCATTGATACAAGTATGTCAAATAGAAGATTTAGA TGAACAATCAATAGGTTTTTCTATAGGACCACGACTGAATGCTGTTGGTAGATTACAGGATGCTGATTTAGCAGTTGAAC TACTTCTTACTGAAGATATGGAAGCAGCTTTGGAGATAGCCAATGAAATTAATAAAATAAATGATGAACGAAAAAAAGTA GTTCAGCGGATTGTTAGTGAGGCCGATCAAATTGTGAATTCCAAACCAGAAAGAAGAATTATTGTGGTCTCGAATGAAGC TTGGAATCAGGGCGTTCTCGGTATTGTAGCTTCACATCTAGTTCGAAAGTACGATCGACCAGCAATTGTGTTATCAACCC AACCAGAAAATGGAGTCGTAAAAGGTTCTGCTCGAAGTATTCCAGCTTTTGATTTATTTGAAGGTTGTATGCGAATGAGA GACTTATTTACACATTTTGGTGGACACTCGCAAGCTGCCGGTATGACGCTTCCGATAGAAAATGTAGATAAGTTAGAACT TCAACTTGATGATATATTAAATAATGAACTTGCGGAGGAAGATTTAAAACAGGAATTGGAAATAAGCGGGCAATTAAATA TGGAAAATATTAATATAGAATTAATAAAGGATATTTCGAAGCTTGCTCCTTTTGGAATGAAAAATCCTAAGCCTGTCTTT CAAATTAAAGAAATTCCTTCAGATATAAAGCGGATTGGAAGCAAAAAGAATCATTTAAAAATGCAGTTCCGTAAAAATTC TACTCGTATGGACGCTATTGGCTTCGGTTGGGGAGATGCTTATAATCAAATTGCCCCCCATACACCGATTCAAATTGCAG GAGAACTATCCATAAATGAATGGAATGGTAACCAGACTGCCCAATTAATGATACAAGATATGAAGATTGACGAATGGCAG TTGTTTGATTACAGAGGTAAACGTAGAGAAAATATCATCCCGCACGTAGAAGAAGATGCGGTTATCATATCTAATCAAAC AGAATCTATTACAAGTGAAGTTAGTCATGTTAGTTATAACAGTGATATTATTAGCGACCATAACAGATGCCGTACGGTTT ATATAAATGATCTTCCCAAACAATTAGATGACTTAAAATATGTAATCAATTATTTTCAACCTAAGAAGATTGTCGTGTGT TATGAAGTTGAATCAAGTAATTATTTATTTGCATTTCCTAGTAGAGAAGATTTCGTGTGGTATTATGCTTTAATAAAGAA ACAAGGCCCATTCCATGTTGCTGCCAATGTAGAATCGTTAAAAAAGCACAAAGGCTGGAATGAAGATAAAATTAATTTTA TGTCTGAGGTGTTTTCTGATTTAGGCTTTGTTAAAATAAAAGATGGTAAAGTTACAGCATTGGATAATCCACTCAAAAAA GATTTAACTGAATCAACCGTTTATCAAGCACGAGAGAAACAATCTGAGATAGAAAAACAACTGTATTATTCAAATTATGA GGATTTAAGAAAATGGTTTATGGAAAGTATGGATTATTTGGAAAATCCGAGGGAGGAAGCAACACATGGAATTTAA
Upstream 100 bases:
>100_bases CCCATCCTTTTTTTATACTAACTAGCTATAAAGAATATATAACAATCTATTTGCTCCTCTTAACTTACTTTTGTATAATA GATTAGTCAGGGGTGAACGT
Downstream 100 bases:
>100_bases AAATTATATTGAAATAGTAGAAGATTGGCCTAAGGAAGGCATTAAATTTAAAGATATTACCCCATTGATGGCAGATGGAA AAGCTTTTAAATCTGCAGTC
Product: single-strand DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MLDSKMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFLLKDMEKAVQRIHKAIQNEE KILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFTEGYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELG MDLIITDHHEPQTNIPESFAIIHPKCSPEYPFNELAGVGVAFKFAEALLGYFPSQFLSYTAIGTIADLVPLFDENRVLAS YGLKELRATTDVGLKALIQVCQIEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDMEAALEIANEINKINDERKKV VQRIVSEADQIVNSKPERRIIVVSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMR DLFTHFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGMKNPKPVF QIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMKIDEWQ LFDYRGKRRENIIPHVEEDAVIISNQTESITSEVSHVSYNSDIISDHNRCRTVYINDLPKQLDDLKYVINYFQPKKIVVC YEVESSNYLFAFPSREDFVWYYALIKKQGPFHVAANVESLKKHKGWNEDKINFMSEVFSDLGFVKIKDGKVTALDNPLKK DLTESTVYQAREKQSEIEKQLYYSNYEDLRKWFMESMDYLENPREEATHGI
Sequences:
>Translated_771_residues MLDSKMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFLLKDMEKAVQRIHKAIQNEE KILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFTEGYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELG MDLIITDHHEPQTNIPESFAIIHPKCSPEYPFNELAGVGVAFKFAEALLGYFPSQFLSYTAIGTIADLVPLFDENRVLAS YGLKELRATTDVGLKALIQVCQIEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDMEAALEIANEINKINDERKKV VQRIVSEADQIVNSKPERRIIVVSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMR DLFTHFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGMKNPKPVF QIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMKIDEWQ LFDYRGKRRENIIPHVEEDAVIISNQTESITSEVSHVSYNSDIISDHNRCRTVYINDLPKQLDDLKYVINYFQPKKIVVC YEVESSNYLFAFPSREDFVWYYALIKKQGPFHVAANVESLKKHKGWNEDKINFMSEVFSDLGFVKIKDGKVTALDNPLKK DLTESTVYQAREKQSEIEKQLYYSNYEDLRKWFMESMDYLENPREEATHGI >Mature_771_residues MLDSKMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFLLKDMEKAVQRIHKAIQNEE KILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFTEGYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELG MDLIITDHHEPQTNIPESFAIIHPKCSPEYPFNELAGVGVAFKFAEALLGYFPSQFLSYTAIGTIADLVPLFDENRVLAS YGLKELRATTDVGLKALIQVCQIEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDMEAALEIANEINKINDERKKV VQRIVSEADQIVNSKPERRIIVVSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMR DLFTHFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGMKNPKPVF QIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMKIDEWQ LFDYRGKRRENIIPHVEEDAVIISNQTESITSEVSHVSYNSDIISDHNRCRTVYINDLPKQLDDLKYVINYFQPKKIVVC YEVESSNYLFAFPSREDFVWYYALIKKQGPFHVAANVESLKKHKGWNEDKINFMSEVFSDLGFVKIKDGKVTALDNPLKK DLTESTVYQAREKQSEIEKQLYYSNYEDLRKWFMESMDYLENPREEATHGI
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=561, Percent_Identity=31.729055258467, Blast_Score=271, Evalue=1e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 87699; Mature: 87699
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDSKMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPF CCCCCCCCCCCHHCCCCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCH LLKDMEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFTE HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC GYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESFA CCCCCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEE IIHPKCSPEYPFNELAGVGVAFKFAEALLGYFPSQFLSYTAIGTIADLVPLFDENRVLAS EECCCCCCCCCHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHH YGLKELRATTDVGLKALIQVCQIEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDM CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHCCCCCCCCEEEEEHHHHH EAALEIANEINKINDERKKVVQRIVSEADQIVNSKPERRIIVVSNEAWNQGVLGIVASHL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHH VRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMRDLFTHFGGHSQAAGMTLPIE HHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC NVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGMKNPKPVF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCH QIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIAGELSINE HHHHCHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCCHHHHCCCCCCCEEEEEEEEEEE WNGNQTAQLMIQDMKIDEWQLFDYRGKRRENIIPHVEEDAVIISNQTESITSEVSHVSYN CCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCC SDIISDHNRCRTVYINDLPKQLDDLKYVINYFQPKKIVVCYEVESSNYLFAFPSREDFVW CCHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCEE YYALIKKQGPFHVAANVESLKKHKGWNEDKINFMSEVFSDLGFVKIKDGKVTALDNPLKK EEEEHHCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHH DLTESTVYQAREKQSEIEKQLYYSNYEDLRKWFMESMDYLENPREEATHGI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCC >Mature Secondary Structure MLDSKMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPF CCCCCCCCCCCHHCCCCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCH LLKDMEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFTE HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC GYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESFA CCCCCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEE IIHPKCSPEYPFNELAGVGVAFKFAEALLGYFPSQFLSYTAIGTIADLVPLFDENRVLAS EECCCCCCCCCHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHH YGLKELRATTDVGLKALIQVCQIEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDM CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHCCCCCCCCEEEEEHHHHH EAALEIANEINKINDERKKVVQRIVSEADQIVNSKPERRIIVVSNEAWNQGVLGIVASHL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHH VRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMRDLFTHFGGHSQAAGMTLPIE HHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC NVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGMKNPKPVF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCH QIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIAGELSINE HHHHCHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCCHHHHCCCCCCCEEEEEEEEEEE WNGNQTAQLMIQDMKIDEWQLFDYRGKRRENIIPHVEEDAVIISNQTESITSEVSHVSYN CCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCC SDIISDHNRCRTVYINDLPKQLDDLKYVINYFQPKKIVVCYEVESSNYLFAFPSREDFVW CCHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCEE YYALIKKQGPFHVAANVESLKKHKGWNEDKINFMSEVFSDLGFVKIKDGKVTALDNPLKK EEEEHHCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHH DLTESTVYQAREKQSEIEKQLYYSNYEDLRKWFMESMDYLENPREEATHGI HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]