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The map label for this gene is rbfA

Identifier: 23099055

GI number: 23099055

Start: 1638471

End: 1638812

Strand: Direct

Name: rbfA

Synonym: OB1600

Alternate gene names: 23099055

Gene position: 1638471-1638812 (Clockwise)

Preceding gene: 23099054

Following gene: 23099056

Centisome position: 45.13

GC content: 35.38

Gene sequence:

>342_bases
ATGGCAGAATTAAGAGCTCATCGAATTGCAGAGCAAATGAAAAAAGAGCTTGGTGAAATTCTCTCTAGAAAGATAAAAGA
TCCGCGTGTTGGATTTGTAACTGTAACTGATGTAGAGGTTACTGGTGACCTTCAACAGGCAAAAGTGTATATATCTGTCC
TTGGAGATGAGAAGAAAAAACAAGATACACTATTGGGTCTTTCAAAAGCAAAAGGATTTATCCGTTCTGAAATTGGTAAT
CGAATTCGCTTAAGAAAAACACCAGAAATTACGTTTGAATTCGATGAAGCATTAGAACAGGGAAATCGTATAGAAACAAT
CCTTAGAGACTTAAATAAGTAA

Upstream 100 bases:

>100_bases
AATTCAGCATGCCATTGGTCAAATTGACTCTTTTTCAGAGTTAGAGAGAACAATTACAAATGTGGAAAGATTATAAAGCA
CATGTACTGAGGTGATAGAT

Downstream 100 bases:

>100_bases
TTGAAGAATCTGATCCAGCCCTAAGCGTTGGGTCAGATTCTTTTATAAGTGCTCAACTTTTAGTGTTTTTAAGGTTACAT
AATCGTTCGTGTACATTGAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MAELRAHRIAEQMKKELGEILSRKIKDPRVGFVTVTDVEVTGDLQQAKVYISVLGDEKKKQDTLLGLSKAKGFIRSEIGN
RIRLRKTPEITFEFDEALEQGNRIETILRDLNK

Sequences:

>Translated_113_residues
MAELRAHRIAEQMKKELGEILSRKIKDPRVGFVTVTDVEVTGDLQQAKVYISVLGDEKKKQDTLLGLSKAKGFIRSEIGN
RIRLRKTPEITFEFDEALEQGNRIETILRDLNK
>Mature_112_residues
AELRAHRIAEQMKKELGEILSRKIKDPRVGFVTVTDVEVTGDLQQAKVYISVLGDEKKKQDTLLGLSKAKGFIRSEIGNR
IRLRKTPEITFEFDEALEQGNRIETILRDLNK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=42.8571428571429, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_OCEIH (Q8EQT9)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692521.1
- ProteinModelPortal:   Q8EQT9
- SMR:   Q8EQT9
- GeneID:   1017988
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1600
- NMPDR:   fig|221109.1.peg.1602
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   OIHE221109:OB1600-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 12924; Mature: 12793

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELRAHRIAEQMKKELGEILSRKIKDPRVGFVTVTDVEVTGDLQQAKVYISVLGDEKKK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHEECCCCCHH
QDTLLGLSKAKGFIRSEIGNRIRLRKTPEITFEFDEALEQGNRIETILRDLNK
HHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
AELRAHRIAEQMKKELGEILSRKIKDPRVGFVTVTDVEVTGDLQQAKVYISVLGDEKKK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHEECCCCCHH
QDTLLGLSKAKGFIRSEIGNRIRLRKTPEITFEFDEALEQGNRIETILRDLNK
HHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376