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The map label for this gene is ylmE [H]

Identifier: 23098934

GI number: 23098934

Start: 1519409

End: 1520080

Strand: Direct

Name: ylmE [H]

Synonym: OB1479

Alternate gene names: 23098934

Gene position: 1519409-1520080 (Clockwise)

Preceding gene: 23098933

Following gene: 23098935

Centisome position: 41.85

GC content: 34.23

Gene sequence:

>672_bases
ATGGTAGATGTGGCAACGAATTTATCTAATATACAAGAAAACATTAGACAAGCTTGTGCAAATGCAAACCGTAGTCCTGA
AGATATTCGACTTATTGCTGTGACAAAATATGTTACAATTGAACGAACCAAGGAAGCGATTAATGCAGGAATTGACAATC
TTGGCGAAAATCGAAACGAAGGTTTTTTGGAAAAATATAATGAAATTCAAAATCAAGTGAACTGGCATTTTATTGGTTCC
TTACAGTCACGTAAGGTAAAGGATATCATTAACCAAGTAGATTTTATACATTCTTTGGATAGAAAATCATTAGCTAAAGA
AATAAATAAACGAGCTACTCATCCAGTTAACTGTTTTGTTCAAGTAAATGTTAGTGGGGAAGAATCGAAACACGGAATTT
TCCCAGATGAAGTGATTTCATTTATTAAGTCATTATCTGGATACGAAAATATTAAAATAGTTGGACTAATGACAATGGCT
CCACATGTGGAAGATCCAGAGGATGTGAGATCTGTCTTTAAAAAATTGAGAGATCTACGAGATGAAATAACAAAAAAAGA
ATTACCACACGCACCATGTGAATGGCTTTCAATGGGAATGAGTAACGATTATCATATTGCTATAGAAGAGGGAGCTACAC
ATGTACGTATTGGATCGAAACTCGTTGGATAG

Upstream 100 bases:

>100_bases
TGAAACGCTATTTTTCTCTCATCGTCGTGATAAAGGAATAACAGGTAGGATGCTTGGATTTATAGGATATAATGTGTAAA
AAAGGGTGGAGAACGACAAA

Downstream 100 bases:

>100_bases
AATTTTTAAGTAGAGAGGTGAAGGAGATGAGTTTTAAAAATAAATTAAAAGATTATTTTATGGGTGACGAATATGAGTAT
GAATATGTAGACGAGGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MVDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEGFLEKYNEIQNQVNWHFIGS
LQSRKVKDIINQVDFIHSLDRKSLAKEINKRATHPVNCFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMA
PHVEDPEDVRSVFKKLRDLRDEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG

Sequences:

>Translated_223_residues
MVDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEGFLEKYNEIQNQVNWHFIGS
LQSRKVKDIINQVDFIHSLDRKSLAKEINKRATHPVNCFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMA
PHVEDPEDVRSVFKKLRDLRDEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG
>Mature_223_residues
MVDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEGFLEKYNEIQNQVNWHFIGS
LQSRKVKDIINQVDFIHSLDRKSLAKEINKRATHPVNCFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMA
PHVEDPEDVRSVFKKLRDLRDEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=242, Percent_Identity=34.7107438016529, Blast_Score=115, Evalue=4e-26,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=34.3347639484979, Blast_Score=121, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=240, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=31.6279069767442, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45550861, Length=239, Percent_Identity=28.4518828451883, Blast_Score=80, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25237; Mature: 25237

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCHHHCCCCCCC
GFLEKYNEIQNQVNWHFIGSLQSRKVKDIINQVDFIHSLDRKSLAKEINKRATHPVNCFV
HHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
QVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMAPHVEDPEDVRSVFKKLRDLR
EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
DEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG
HHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCCCC
>Mature Secondary Structure
MVDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCHHHCCCCCCC
GFLEKYNEIQNQVNWHFIGSLQSRKVKDIINQVDFIHSLDRKSLAKEINKRATHPVNCFV
HHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
QVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMAPHVEDPEDVRSVFKKLRDLR
EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
DEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG
HHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]