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The map label for this gene is ylmD [H]

Identifier: 23098933

GI number: 23098933

Start: 1518617

End: 1519387

Strand: Direct

Name: ylmD [H]

Synonym: OB1478

Alternate gene names: 23098933

Gene position: 1518617-1519387 (Clockwise)

Preceding gene: 23098932

Following gene: 23098934

Centisome position: 41.83

GC content: 35.02

Gene sequence:

>771_bases
GTGGAAGAATGGGAGAGAGAACACCCTGGATTAATGGTAGGTTTTACAACGAAAAATGGTGGTACAAGTATAGATGAATA
CAGTTCTTTAAATATGGGATTTCATGTAAATGATAGGGAGCAGAATGTACTGCAAAACAGAAAAATATTGAGTGAGCAAT
TGCACGTAGACTTATCCAATTGGGTGGTTGGCGAACAAGTTCACGATACAAAGGTGGCACTTATTCAGGCTACTGATGTT
GGTTCTGGGAGTCATTCAAATAATACATCATTATCTGGGGTAGATGGATTAATTATCCCTCCTGATGTAAATGCCCTAGC
TGTATCACTATATGCTGACTGTGTTCCATTGTATTTTTTTGATCCAGTGACGAAATTTGTAGGAATTGCGCATGCAGGCT
GGAAAGGTACAGTGGGAAGAATCGCATCGAAAATGGTACAGTCATTTGTAGATCAAGGGTCAGAAAAGAAAAATATTAAA
GTAATTGTAGGACCATCCATTTCAAGAGAACATTACCAAGTAGATAATAATGTTATTAAACATTTGACTGACAATGAAAT
GCAAATTTGTACGAATCAAGTATCTGATAATCAATATTTATTAGATTTAAAAGAGTTAAATAGAGAAATCCTTTTACAAT
CTGGTGTTTTTCGTCATAATATAGAAGTAACCAAATATTGTACGTTTCGTGATGAAACGCTATTTTTCTCTCATCGTCGT
GATAAAGGAATAACAGGTAGGATGCTTGGATTTATAGGATATAATGTGTAA

Upstream 100 bases:

>100_bases
TCATAAATATGATACCATTATGACAAGATGAAATAGTATTTTCCGGGGGGATATGAGAGTGAAAGATATATTTATACAGA
AAGAAGCGCGTTATTTTCAT

Downstream 100 bases:

>100_bases
AAAAGGGTGGAGAACGACAAAATGGTAGATGTGGCAACGAATTTATCTAATATACAAGAAAACATTAGACAAGCTTGTGC
AAATGCAAACCGTAGTCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MEEWEREHPGLMVGFTTKNGGTSIDEYSSLNMGFHVNDREQNVLQNRKILSEQLHVDLSNWVVGEQVHDTKVALIQATDV
GSGSHSNNTSLSGVDGLIIPPDVNALAVSLYADCVPLYFFDPVTKFVGIAHAGWKGTVGRIASKMVQSFVDQGSEKKNIK
VIVGPSISREHYQVDNNVIKHLTDNEMQICTNQVSDNQYLLDLKELNREILLQSGVFRHNIEVTKYCTFRDETLFFSHRR
DKGITGRMLGFIGYNV

Sequences:

>Translated_256_residues
MEEWEREHPGLMVGFTTKNGGTSIDEYSSLNMGFHVNDREQNVLQNRKILSEQLHVDLSNWVVGEQVHDTKVALIQATDV
GSGSHSNNTSLSGVDGLIIPPDVNALAVSLYADCVPLYFFDPVTKFVGIAHAGWKGTVGRIASKMVQSFVDQGSEKKNIK
VIVGPSISREHYQVDNNVIKHLTDNEMQICTNQVSDNQYLLDLKELNREILLQSGVFRHNIEVTKYCTFRDETLFFSHRR
DKGITGRMLGFIGYNV
>Mature_256_residues
MEEWEREHPGLMVGFTTKNGGTSIDEYSSLNMGFHVNDREQNVLQNRKILSEQLHVDLSNWVVGEQVHDTKVALIQATDV
GSGSHSNNTSLSGVDGLIIPPDVNALAVSLYADCVPLYFFDPVTKFVGIAHAGWKGTVGRIASKMVQSFVDQGSEKKNIK
VIVGPSISREHYQVDNNVIKHLTDNEMQICTNQVSDNQYLLDLKELNREILLQSGVFRHNIEVTKYCTFRDETLFFSHRR
DKGITGRMLGFIGYNV

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=150, Percent_Identity=32, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI190194372, Length=150, Percent_Identity=32, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1788945, Length=253, Percent_Identity=30.0395256916996, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28744; Mature: 28744

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEWEREHPGLMVGFTTKNGGTSIDEYSSLNMGFHVNDREQNVLQNRKILSEQLHVDLSN
CCCCHHHCCCEEEEEEECCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHEEHHH
WVVGEQVHDTKVALIQATDVGSGSHSNNTSLSGVDGLIIPPDVNALAVSLYADCVPLYFF
CEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
DPVTKFVGIAHAGWKGTVGRIASKMVQSFVDQGSEKKNIKVIVGPSISREHYQVDNNVIK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHEEHHHHHHH
HLTDNEMQICTNQVSDNQYLLDLKELNREILLQSGVFRHNIEVTKYCTFRDETLFFSHRR
HCCCCCHHHHHHCCCCCEEEEEHHHCCHHHHHHCCCEEECCEEEEEEEECCCEEEEECCC
DKGITGRMLGFIGYNV
CCCCCHHHHEEECCCC
>Mature Secondary Structure
MEEWEREHPGLMVGFTTKNGGTSIDEYSSLNMGFHVNDREQNVLQNRKILSEQLHVDLSN
CCCCHHHCCCEEEEEEECCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHEEHHH
WVVGEQVHDTKVALIQATDVGSGSHSNNTSLSGVDGLIIPPDVNALAVSLYADCVPLYFF
CEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
DPVTKFVGIAHAGWKGTVGRIASKMVQSFVDQGSEKKNIKVIVGPSISREHYQVDNNVIK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHEEHHHHHHH
HLTDNEMQICTNQVSDNQYLLDLKELNREILLQSGVFRHNIEVTKYCTFRDETLFFSHRR
HCCCCCHHHHHHCCCCCEEEEEHHHCCHHHHHHCCCEEECCEEEEEEEECCCEEEEECCC
DKGITGRMLGFIGYNV
CCCCCHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]