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The map label for this gene is spoVD [H]

Identifier: 23098920

GI number: 23098920

Start: 1502732

End: 1504663

Strand: Direct

Name: spoVD [H]

Synonym: OB1465

Alternate gene names: 23098920

Gene position: 1502732-1504663 (Clockwise)

Preceding gene: 23098919

Following gene: 23098921

Centisome position: 41.39

GC content: 39.39

Gene sequence:

>1932_bases
ATGAAACGTGTATCTACTGTTACGATAAAGAAAAGAATAGTCACTGTTTTTCTTTTGGGAGCATTGATTATTGCGGTTAT
TATTGGTCGCTTAGCCTATGTACAATTTGTTCTCGGTGATGATTTAGCAGGACAAGCAAATGAATTATGGACAAGAGATA
TTACCTTTGCAGCGGAACGAGGGTATATTCTTGATTCAGAAGGAGAGGTTTTGGCGGAGAATGTCACTGCTCCAACGGTA
ATAGTTATGCCAAGACAAATCACGAACCCAGAACAAACAGCCACACAGCTTGCAAAAATATTAGATGTTCCTCAGGATCG
TGTGCATGAAACAATCACGAAGAATACATCAAGTGTGATGATACGTCCAGAAGGCATTAAAATAACAGACAAGCAGGAAA
AAGCGATTCGGGAATTAGATTTATCTGGAGTTTATTTAGCTAAAGATTCCAAACGGTACTATCCGAACGGGGATGATTTA
TCTCATGTACTTGGTTTTACTGGAATTGATAATCAAGGGCTAATGGGATTAGAATTGTCTTATGATGATAAATTAAAAGG
AGAGAATGGTAGTCTGTCACTTTATTCGGATGCAAAGGGAAGGAAACTAGAAGAATTAGCAGATGAATACAATCCTCCAG
TGGATGGGTTGAATTTGCAGACTACTATTAACACAAAAGTGCAAACGATTATTGAGAGAGAGCTCGATAAAGCAACAATA
AAATATAACCCGGATGGTGCACTAGCTATTGCGGTAAATCCAAAGACAGGTGGCATATTAGGGATGTCATCACGCCCTAA
TTTTGATCCGGAGAACTATCAAGATGTTGATGCCTCTATTTTTGGAAGAAATTTACCAATTTGGAGCACTTATGAGCCAG
GGTCTACGTTTAAGATTATTACATTAGCTGCAGCATTGGAAGAAGGAGCAGTAAATTTAGAAGAAGATCGTTTCCATGAT
GATGGAGATATTGAAGTTGGTGGTGCTACAATTCATTGTTGGAAAAAAGGTGGGCATGGCGATCAAAGTTATTTAGAGGT
TGTCCAAAATTCATGTAACCCAGGTTTTGTTAATCTTGGTCAACGGCTAGGGACAGAAAAATTATTTTCTTATATAGATG
CTTTTGGTTTTGGGAAGAAGACAGGAATAGACTTACAAGGAGAAGGAAACGGGATACTATTTCAACCTGAAAATGTAGGT
CCTGTTGAGTTAGCGACAACTTCATTTGGACAAGGGGTTTCAGTTACACCGATTCAACAAGTAATGGCGGTGGCGGCAGC
TGTAAACGGTGGATACTTGTATAAACCATACATTGCGGACGAATGGATAGATCCAGTGAATGGAGAAACTGTAGAAAAGT
ACGAGCCACAATTACAAAATCGAGTTATTTCTGAGGATACCTCTGAGGAAATAAGATACGCATTAGAGAGTGTTGTAGCA
CAAGGGACAGGACGTCCTGCATATGTTGATGGTTATCGAGTAGGCGGGAAAACCGGTACTGCTCAAAAGGTAGGACCTAA
CGGGGGGTATATGGAAAATAACTACATTGTCTCATTTATCGGCTTTGCTCCAGCTGATGATCCAGAAATTGTGGTATATG
TTGCAGTTGATAATCCAAAAGACACCTTACAATTTGGAGGTGTTGTAGCTGCTCCAATTGTAGGTACAATTATTGGTGAT
AGTTTGAGAGCAATGGAAGTCGAGCCCACTACAGATGGGTTAGAAAAAGAATATTCGTGGCCGGATCAACCGAAAGTGGA
AGTACCAGACTTAATTGGTGAGTCTACCCAAAAATTACCTGAGTATCTAGTTGATTTAAGTGTTGTAACCAATGGAGAGG
GAGATACGATTATAGAGCAATCACCGAAACCAGGAACAATGTTAGAATCAGGTTCCACTGTTAGAATCTATTTAAGTGAT
GAAAATGAATAA

Upstream 100 bases:

>100_bases
AAGACGAATCTGAGTAAACGATGGAAAGGACAAACAGTGTTCTATTCAAAATTCTTTATTCATATAGTGGATACAAAGTA
GCCCAAGAAGGAGTTGGCTT

Downstream 100 bases:

>100_bases
TGAAAATCATCGTTAAACAAGAAAAAATTTGCTATAATAGGAAGGTCAAATGGAATGAAAAAGAAGAGTACTTACATCTT
CTTCCTACTAAAAAAAGAAA

Product: stage V sporulation protein D

Products: NA

Alternate protein names: Sporulation-specific penicillin-binding protein [H]

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MKRVSTVTIKKRIVTVFLLGALIIAVIIGRLAYVQFVLGDDLAGQANELWTRDITFAAERGYILDSEGEVLAENVTAPTV
IVMPRQITNPEQTATQLAKILDVPQDRVHETITKNTSSVMIRPEGIKITDKQEKAIRELDLSGVYLAKDSKRYYPNGDDL
SHVLGFTGIDNQGLMGLELSYDDKLKGENGSLSLYSDAKGRKLEELADEYNPPVDGLNLQTTINTKVQTIIERELDKATI
KYNPDGALAIAVNPKTGGILGMSSRPNFDPENYQDVDASIFGRNLPIWSTYEPGSTFKIITLAAALEEGAVNLEEDRFHD
DGDIEVGGATIHCWKKGGHGDQSYLEVVQNSCNPGFVNLGQRLGTEKLFSYIDAFGFGKKTGIDLQGEGNGILFQPENVG
PVELATTSFGQGVSVTPIQQVMAVAAAVNGGYLYKPYIADEWIDPVNGETVEKYEPQLQNRVISEDTSEEIRYALESVVA
QGTGRPAYVDGYRVGGKTGTAQKVGPNGGYMENNYIVSFIGFAPADDPEIVVYVAVDNPKDTLQFGGVVAAPIVGTIIGD
SLRAMEVEPTTDGLEKEYSWPDQPKVEVPDLIGESTQKLPEYLVDLSVVTNGEGDTIIEQSPKPGTMLESGSTVRIYLSD
ENE

Sequences:

>Translated_643_residues
MKRVSTVTIKKRIVTVFLLGALIIAVIIGRLAYVQFVLGDDLAGQANELWTRDITFAAERGYILDSEGEVLAENVTAPTV
IVMPRQITNPEQTATQLAKILDVPQDRVHETITKNTSSVMIRPEGIKITDKQEKAIRELDLSGVYLAKDSKRYYPNGDDL
SHVLGFTGIDNQGLMGLELSYDDKLKGENGSLSLYSDAKGRKLEELADEYNPPVDGLNLQTTINTKVQTIIERELDKATI
KYNPDGALAIAVNPKTGGILGMSSRPNFDPENYQDVDASIFGRNLPIWSTYEPGSTFKIITLAAALEEGAVNLEEDRFHD
DGDIEVGGATIHCWKKGGHGDQSYLEVVQNSCNPGFVNLGQRLGTEKLFSYIDAFGFGKKTGIDLQGEGNGILFQPENVG
PVELATTSFGQGVSVTPIQQVMAVAAAVNGGYLYKPYIADEWIDPVNGETVEKYEPQLQNRVISEDTSEEIRYALESVVA
QGTGRPAYVDGYRVGGKTGTAQKVGPNGGYMENNYIVSFIGFAPADDPEIVVYVAVDNPKDTLQFGGVVAAPIVGTIIGD
SLRAMEVEPTTDGLEKEYSWPDQPKVEVPDLIGESTQKLPEYLVDLSVVTNGEGDTIIEQSPKPGTMLESGSTVRIYLSD
ENE
>Mature_643_residues
MKRVSTVTIKKRIVTVFLLGALIIAVIIGRLAYVQFVLGDDLAGQANELWTRDITFAAERGYILDSEGEVLAENVTAPTV
IVMPRQITNPEQTATQLAKILDVPQDRVHETITKNTSSVMIRPEGIKITDKQEKAIRELDLSGVYLAKDSKRYYPNGDDL
SHVLGFTGIDNQGLMGLELSYDDKLKGENGSLSLYSDAKGRKLEELADEYNPPVDGLNLQTTINTKVQTIIERELDKATI
KYNPDGALAIAVNPKTGGILGMSSRPNFDPENYQDVDASIFGRNLPIWSTYEPGSTFKIITLAAALEEGAVNLEEDRFHD
DGDIEVGGATIHCWKKGGHGDQSYLEVVQNSCNPGFVNLGQRLGTEKLFSYIDAFGFGKKTGIDLQGEGNGILFQPENVG
PVELATTSFGQGVSVTPIQQVMAVAAAVNGGYLYKPYIADEWIDPVNGETVEKYEPQLQNRVISEDTSEEIRYALESVVA
QGTGRPAYVDGYRVGGKTGTAQKVGPNGGYMENNYIVSFIGFAPADDPEIVVYVAVDNPKDTLQFGGVVAAPIVGTIIGD
SLRAMEVEPTTDGLEKEYSWPDQPKVEVPDLIGESTQKLPEYLVDLSVVTNGEGDTIIEQSPKPGTMLESGSTVRIYLSD
ENE

Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]

COG id: COG0768

COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PASTA domain [H]

Homologues:

Organism=Escherichia coli, GI1786272, Length=573, Percent_Identity=30.7155322862129, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1786854, Length=621, Percent_Identity=25.4428341384863, Blast_Score=157, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR005543
- InterPro:   IPR005311
- InterPro:   IPR001460
- InterPro:   IPR011927 [H]

Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]

EC number: NA

Molecular weight: Translated: 69937; Mature: 69937

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVSTVTIKKRIVTVFLLGALIIAVIIGRLAYVQFVLGDDLAGQANELWTRDITFAAER
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCEEEEECC
GYILDSEGEVLAENVTAPTVIVMPRQITNPEQTATQLAKILDVPQDRVHETITKNTSSVM
CEEECCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
IRPEGIKITDKQEKAIRELDLSGVYLAKDSKRYYPNGDDLSHVLGFTGIDNQGLMGLELS
EECCCEEECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEC
YDDKLKGENGSLSLYSDAKGRKLEELADEYNPPVDGLNLQTTINTKVQTIIERELDKATI
CCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCEEE
KYNPDGALAIAVNPKTGGILGMSSRPNFDPENYQDVDASIFGRNLPIWSTYEPGSTFKII
EECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEE
TLAAALEEGAVNLEEDRFHDDGDIEVGGATIHCWKKGGHGDQSYLEVVQNSCNPGFVNLG
EEEEHHHCCCCCCHHHCCCCCCCEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHH
QRLGTEKLFSYIDAFGFGKKTGIDLQGEGNGILFQPENVGPVELATTSFGQGVSVTPIQQ
HHCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCHHHH
VMAVAAAVNGGYLYKPYIADEWIDPVNGETVEKYEPQLQNRVISEDTSEEIRYALESVVA
HHHHHHHHCCCEEEECCCCHHCCCCCCCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHH
QGTGRPAYVDGYRVGGKTGTAQKVGPNGGYMENNYIVSFIGFAPADDPEIVVYVAVDNPK
CCCCCCEEECCEEECCCCCCCCEECCCCCEEECCEEEEEEECCCCCCCCEEEEEEECCCH
DTLQFGGVVAAPIVGTIIGDSLRAMEVEPTTDGLEKEYSWPDQPKVEVPDLIGESTQKLP
HHHHHCCEEHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCCCCCCHHHCHHHHHHH
EYLVDLSVVTNGEGDTIIEQSPKPGTMLESGSTVRIYLSDENE
HHHEEEEEEECCCCCEEEECCCCCCCEECCCCEEEEEECCCCC
>Mature Secondary Structure
MKRVSTVTIKKRIVTVFLLGALIIAVIIGRLAYVQFVLGDDLAGQANELWTRDITFAAER
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCEEEEECC
GYILDSEGEVLAENVTAPTVIVMPRQITNPEQTATQLAKILDVPQDRVHETITKNTSSVM
CEEECCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
IRPEGIKITDKQEKAIRELDLSGVYLAKDSKRYYPNGDDLSHVLGFTGIDNQGLMGLELS
EECCCEEECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEC
YDDKLKGENGSLSLYSDAKGRKLEELADEYNPPVDGLNLQTTINTKVQTIIERELDKATI
CCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCEEE
KYNPDGALAIAVNPKTGGILGMSSRPNFDPENYQDVDASIFGRNLPIWSTYEPGSTFKII
EECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCEEEE
TLAAALEEGAVNLEEDRFHDDGDIEVGGATIHCWKKGGHGDQSYLEVVQNSCNPGFVNLG
EEEEHHHCCCCCCHHHCCCCCCCEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHH
QRLGTEKLFSYIDAFGFGKKTGIDLQGEGNGILFQPENVGPVELATTSFGQGVSVTPIQQ
HHCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCHHHH
VMAVAAAVNGGYLYKPYIADEWIDPVNGETVEKYEPQLQNRVISEDTSEEIRYALESVVA
HHHHHHHHCCCEEEECCCCHHCCCCCCCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHH
QGTGRPAYVDGYRVGGKTGTAQKVGPNGGYMENNYIVSFIGFAPADDPEIVVYVAVDNPK
CCCCCCEEECCEEECCCCCCCCEECCCCCEEECCEEEEEEECCCCCCCCEEEEEEECCCH
DTLQFGGVVAAPIVGTIIGDSLRAMEVEPTTDGLEKEYSWPDQPKVEVPDLIGESTQKLP
HHHHHCCEEHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCCCCCCHHHCHHHHHHH
EYLVDLSVVTNGEGDTIIEQSPKPGTMLESGSTVRIYLSDENE
HHHEEEEEEECCCCCEEEECCCCCCCEECCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8289242; 9384377; 8244929; 8436954 [H]