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The map label for this gene is yybA [H]

Identifier: 23098701

GI number: 23098701

Start: 1294166

End: 1294618

Strand: Direct

Name: yybA [H]

Synonym: OB1246

Alternate gene names: 23098701

Gene position: 1294166-1294618 (Clockwise)

Preceding gene: 28563923

Following gene: 23098702

Centisome position: 35.65

GC content: 33.33

Gene sequence:

>453_bases
ATGAAAGAAATACTACGTGAAATTGGAATGGTAGCAAGGGCATTAGATTCAATAAGTAATATAGAGTTCAAAGAATATGA
GCTCACTAGAGGCCAGTATTTATATCTTGTGAGAATCTGTGAAAGTCCAGGGATCATTCAGGAGAAGGTAGCTGAACTAA
TAAAGGTAGATCGAACTACAGCAGCTCGTTCTATTAAAAAACTTGAAATGAATGGGTTTATTGAGAAGAAGGAAGACGAA
CATAATAAAAAAATTAAAAAACTCTATCCAACAGAGAAAGGGAAAAAGATTTTTCCTCTTATACAAAGAGAAAATGAGCA
CTCCAATGCTGTTGCCTTAAAGGGTTTAACTGAAGAGGAAATCGAAACCATTTTCGATCTTCTTCAAAGAGTAAGAAAAA
ATATAGAAAAAGACTGGGAACTCGTAAAAAAAGGAAACAAGAGAAGTTATTAA

Upstream 100 bases:

>100_bases
ATTGATAAATTTTTGTTGCAAATACAACATAATTAAGTTAAGTTAAATACATGGGCATAAATGTTGCATTTGCAACAAAA
ATATTGCTGAGGAGTTCAAT

Downstream 100 bases:

>100_bases
TAGTAGAAAGGAGTGAAAGGTCTAAATGAGTATAAATATGACTAGATGTACCTTAGAAGATTCACGACAACTTCAATATA
TTGGGTATAAAACATTTAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKEILREIGMVARALDSISNIEFKEYELTRGQYLYLVRICESPGIIQEKVAELIKVDRTTAARSIKKLEMNGFIEKKEDE
HNKKIKKLYPTEKGKKIFPLIQRENEHSNAVALKGLTEEEIETIFDLLQRVRKNIEKDWELVKKGNKRSY

Sequences:

>Translated_150_residues
MKEILREIGMVARALDSISNIEFKEYELTRGQYLYLVRICESPGIIQEKVAELIKVDRTTAARSIKKLEMNGFIEKKEDE
HNKKIKKLYPTEKGKKIFPLIQRENEHSNAVALKGLTEEEIETIFDLLQRVRKNIEKDWELVKKGNKRSY
>Mature_150_residues
MKEILREIGMVARALDSISNIEFKEYELTRGQYLYLVRICESPGIIQEKVAELIKVDRTTAARSIKKLEMNGFIEKKEDE
HNKKIKKLYPTEKGKKIFPLIQRENEHSNAVALKGLTEEEIETIFDLLQRVRKNIEKDWELVKKGNKRSY

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17638; Mature: 17638

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEILREIGMVARALDSISNIEFKEYELTRGQYLYLVRICESPGIIQEKVAELIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARSIKKLEMNGFIEKKEDEHNKKIKKLYPTEKGKKIFPLIQRENEHSNAVALKGLTEEE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCEEEECCCCHHH
IETIFDLLQRVRKNIEKDWELVKKGNKRSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKEILREIGMVARALDSISNIEFKEYELTRGQYLYLVRICESPGIIQEKVAELIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARSIKKLEMNGFIEKKEDEHNKKIKKLYPTEKGKKIFPLIQRENEHSNAVALKGLTEEE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCEEEECCCCHHH
IETIFDLLQRVRKNIEKDWELVKKGNKRSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]