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The map label for this gene is fni

Identifier: 23097992

GI number: 23097992

Start: 570402

End: 571451

Strand: Direct

Name: fni

Synonym: OB0537

Alternate gene names: 23097992

Gene position: 570402-571451 (Clockwise)

Preceding gene: 23097990

Following gene: 23097993

Centisome position: 15.71

GC content: 39.9

Gene sequence:

>1050_bases
ATGGAAAAAGGAATTAATCAACGTAAGACAGAACATATACGTCTTTGCCTTACTGGAAATGTAGAGGGAGTAAATAAATC
AACAGGATTAGAAGGCATTAATTTTATACATAACGCATTACCGGAAATAGATTTCGCAGATATTTCTTTGGAATCAAGTT
TTTTGGGGAAACAATTGAAAGCGCCGTTTTTAGTAAGTTCAATGACTGGGGGATCGGAGCTAGCGACAAAAATTAATCAG
AACCTTGCTATTGCTGCAGAGGAAAAGGGATGGGCACTGGCAATTGGTTCAACGAGGGCTTTCTTAGAAAGCGATCAACA
TAAGGAGTCATTCCTAATCAGAAATCAAGCTCCTACAGCACCATTGATTGTTAATATCGGAGCGGTTCAATTAAATTACG
GCTATGGTCCAGAAGAGTGTCAACGAATTATTGATAAGACAAATGCAGATTCTATTGTCCTTCACCTTAACAGTTTACAG
GAAGCGGTTCAAGATGGCGGAGACCTGAATTTTAAAGATTTACTACCAAAAATAGAGCAGGTCTGCAAACAAGTAAAAGC
CCCGGTGGGAGTAAAAGAAGTAGGTTTTGGGATTGATGGTGAAGTAGCTAGACGATTGTATGACGCAGGTATTTCATATA
TTGATGTAGCCGGTGCTGGAGGTACATCTTGGAGTCAAGTGGAAAAATTACGTTCTAAAGATCCTTTAAATAAAGCGGCA
GCAGAAGCATTTAATAACTGGGGAACTCCGACAAAAGATTGTCTTGTGTCTGTACGTGGAGAATTACCAGAAGCTCCTCT
AGTGGCAAGCGGCGGAATGAAAACAGGTGTAGACGCAGCGAAAGCAATTACGATTGGTGCCGATGTCGTAGGCTTTGCTA
GACATTTATTAAAAGCTGCTATGGAAACACCAGAAGATGTTATTCGGACTATGGAACAGCTGGAGTTAGAATTGAAGATG
ACGATGTTTGGAATTGGAGCTGTTAACTTAGAAGAGTTAAAAAACACGTCTCGGGTATCAATTATGGGACAATCATTAAT
GGATAAGTAA

Upstream 100 bases:

>100_bases
AAAAAGTTAGGTTGGATTATAAGAAAAGCTCTTTCTTTCTTTTCAGCACATAAACCATTACACTAGAGGTAATGAAATTA
GATTAGCGGAGGTAACATCA

Downstream 100 bases:

>100_bases
TAAATGGAGTTGTAAAAGGAAATCCCTTTTACGGCTCTTTTTTTATAAATTTTAAGTCGAACTTTTTAGTGATTAATTAA
GTAATGATGAAAGTGATTCA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MEKGINQRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLKAPFLVSSMTGGSELATKINQ
NLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTAPLIVNIGAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQ
EAVQDGGDLNFKDLLPKIEQVCKQVKAPVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAA
AEAFNNWGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAAMETPEDVIRTMEQLELELKM
TMFGIGAVNLEELKNTSRVSIMGQSLMDK

Sequences:

>Translated_349_residues
MEKGINQRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLKAPFLVSSMTGGSELATKINQ
NLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTAPLIVNIGAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQ
EAVQDGGDLNFKDLLPKIEQVCKQVKAPVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAA
AEAFNNWGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAAMETPEDVIRTMEQLELELKM
TMFGIGAVNLEELKNTSRVSIMGQSLMDK
>Mature_349_residues
MEKGINQRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLKAPFLVSSMTGGSELATKINQ
NLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTAPLIVNIGAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQ
EAVQDGGDLNFKDLLPKIEQVCKQVKAPVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAA
AEAFNNWGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAAMETPEDVIRTMEQLELELKM
TMFGIGAVNLEELKNTSRVSIMGQSLMDK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_OCEIH (Q8EST0)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_691458.1
- ProteinModelPortal:   Q8EST0
- SMR:   Q8EST0
- GeneID:   1015820
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB0537
- NMPDR:   fig|221109.1.peg.540
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   OIHE221109:OB0537-MONOMER
- BRENDA:   5.3.3.2
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 37565; Mature: 37565

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKGINQRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLK
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHC
APFLVSSMTGGSELATKINQNLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTA
CCEEEECCCCCHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHCCCCHHHEEEECCCCCC
PLIVNIGAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQEAVQDGGDLNFKDLLPKIEQ
CEEEEECEEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHH
VCKQVKAPVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAA
HHHHHCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHH
AEAFNNWGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAA
HHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHEEEECHHHHHHHHHHHHHH
METPEDVIRTMEQLELELKMTMFGIGAVNLEELKNTSRVSIMGQSLMDK
HCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCCHHHEECHHHCCC
>Mature Secondary Structure
MEKGINQRKTEHIRLCLTGNVEGVNKSTGLEGINFIHNALPEIDFADISLESSFLGKQLK
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHC
APFLVSSMTGGSELATKINQNLAIAAEEKGWALAIGSTRAFLESDQHKESFLIRNQAPTA
CCEEEECCCCCHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHCCCCHHHEEEECCCCCC
PLIVNIGAVQLNYGYGPEECQRIIDKTNADSIVLHLNSLQEAVQDGGDLNFKDLLPKIEQ
CEEEEECEEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHH
VCKQVKAPVGVKEVGFGIDGEVARRLYDAGISYIDVAGAGGTSWSQVEKLRSKDPLNKAA
HHHHHCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHH
AEAFNNWGTPTKDCLVSVRGELPEAPLVASGGMKTGVDAAKAITIGADVVGFARHLLKAA
HHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHEEEECHHHHHHHHHHHHHH
METPEDVIRTMEQLELELKMTMFGIGAVNLEELKNTSRVSIMGQSLMDK
HCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCCHHHEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376